Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01276 ATGACCATGGCCGTTGCCGACCGTCACAAGCCACACGCCGACGTGAAGCTCTTCAGGCTGTGTCCGATTTGGCAATCAGGGAATACTAATTCGTCTTCTTCCTCGTCGACTCAGAACCTTCACCATAGTGGCCATGGCCCTAGCGACAGAAACTCAACGGCGTCGAATAACATGAAAGCTTCATCTTCTTCCAAGACGGTGTCCTCTGTGGCGAAGTCGCTGTTGCCTCCTAGGCGTAGGCTCCGTCTTGATCCTAACAATTCTTTGTTCTTTCCTTATGAACCCGGAAAGCAGGTAAAGAGCGCCATCAGGTTGAAGAATACGAGCAGATCCCATGTAGCTTTTAAGTTTCAAACTACAGCCCCGAAGAGCTGTTATATGCGGCCCCCTGGTGGCATTCTTGCTCCTGGAGAAAATTTTATTGCTACTGTCTTCAGATTTGTGGAGCACCCCGAGAACAATGAAAAGCCAATGGACCAGAAGAGCAAAATTAAGTTTAAGATCATGAGCCTTAAAGTGAAAGGAGGAACAGAATACGCACCCGAGCTGTTTGAAGAACAGAAGGACCAAGTAACAGTTGAGCGGATTTTGCGGGTCGTATTTGTAGATCCAGAGCGACCTAGTGCAGCTCTCGAAAAGCTGAAACGTCAATTGGCCGAAGCCGAGGCTGCACTTGAAGCACGCAAGAAACCTCCTGTAGAAACAGGTCATCAGGTTGTAGGGGGTGAAGGTCTTGTGATAGATGAATGGAAAGAACGGAGGGAGAAATACCTTGCTCGTCAACAAGTCGGCGCAGTAGACTCTGTGTAA 810 48.64 MTMAVADRHKPHADVKLFRLCPIWQSGNTNSSSSSSTQNLHHSGHGPSDRNSTASNNMKASSSSKTVSSVAKSLLPPRRRLRLDPNNSLFFPYEPGKQVKSAIRLKNTSRSHVAFKFQTTAPKSCYMRPPGGILAPGENFIATVFRFVEHPENNEKPMDQKSKIKFKIMSLKVKGGTEYAPELFEEQKDQVTVERILRVVFVDPERPSAALEKLKRQLAEAEAALEARKKPPVETGHQVVGGEGLVIDEWKERREKYLARQQVGAVDSV 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20136103 20139840 + Lsi04G012760.1 Lsi04g01276 661325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01276 269 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 47 268 IPR016763 GO:0005789
Lsi04g01276 269 MobiDBLite consensus disorder prediction 28 71 - -
Lsi04g01276 269 ProSiteProfiles Major sperm protein (MSP) domain profile. 80 202 IPR000535 -
Lsi04g01276 269 Gene3D Immunoglobulins 77 206 IPR013783 -
Lsi04g01276 269 PANTHER VESICLE-ASSOCIATED PROTEIN 4-1 47 268 - -
Lsi04g01276 269 SUPERFAMILY PapD-like 69 211 IPR008962 -
Lsi04g01276 269 Coils Coil 208 231 - -
Lsi04g01276 269 Pfam MSP (Major sperm protein) domain 81 191 IPR000535 -
Lsi04g01276 269 MobiDBLite consensus disorder prediction 28 80 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01276 - - - csv:101216429 429.098
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00360 Lsi-Chr1:3193871 Lsi04g01276 Lsi-Chr4:20136103 1.11E-74 dispersed
Lsi04g01276 Lsi-Chr4:20136103 Lsi09g00420 Lsi-Chr9:4466804 3.14E-12 dispersed
Lsi04g01276 Lsi-Chr4:20136103 Lsi10g00861 Lsi-Chr10:12786056 9.93E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g304 . . . . . . . . . . . . . . . Cpe06g00722 Cpe02g00727 . . . . . . . Cla11g01808 Cam11g1874 Cec11g1897 Cco11g1905 Clacu11g2038 Cmu11g1843 Cre11g2248 . . Cone14ag1092 Cone15ag1103 Lsi04g01276 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000537 4 3 4 3 5 2 5 3 2 3 3 3 3 3 4 4 2 5 5 3 5 3 3 3 3 3 3 6 6 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01276 Lsi_Chr04 FPKM 0.0 0.0 0.59263 0.722486 0.0 0.0 0.0 0.751249 0.782352 1.441322