Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01280 ATGATGTTATCGGCTTCGCCTTCGACGATAGCTCGAAGCTCACTGGAGGAAATGCTTGATTCTCTTCGACGAAGGGATGAGATTGAGAAGCCTAAAGACTTGCCGCCTGCATTGCCGTCTCGGCCCACTTCGAAGGCTCGGATTCCTCCGGTGAGGCGGGCTTTGCCCGTCAATTTCAGGGTTAATGATGACGGTTCCTCAGAGTGCTCTATTAACGTCTTTAATGGAAGGGAAGATGCAATGAGGAAGGAGAATGGTTTGGGTAACTTTGCATTCAGGAGAATAAAGGGAGATCAAGACGATGAATCACCTTACATGGTAGCTTCAGAAAATGATAATAGAGATCAAGTGAATGGCTCGAATGGCGCTTTACTTTCAAATATTCAAGGGTCTAACTGGGAGGACAATATCAGTTATTTTCTTCAGAAGAAACTCCGGGTTTGGTGTCAACTTCCAACTGGACAATGGGAGTTGGGAACTATACAGTCAAACAGTGGGGTGGAGGCATCTGTCATGCTCTCAAACAAAAAGGTTGTTAAAGTTTCAACTGTAGATCTCTTACCTGCTAATCCAGATATAGTGGAGGGGGTTGATGATCTTGTACAGCTCGGTTATTTGAACGAGCCCTCGGTTATTCACAGTCTCCAGCGAAGATTTTCTCGGGATAAAATTTATAGTAATGCAGGGTCAGTTTTGATTGCAGTCAATCCCTTGAAAGACACTAAACAGTATGGAAATGGATTAATTACAGCCTATAGGCAGAGAGTCATGAACAACCCTCATGTTTATGCTATAGCTGATTCTGCCTATTCTGCAATGATGCAAGATGAAGTTAATCAATCTATTATTATCAGTGGAGAAAGTGGAGCTGGAAAAACTGAGACAGCAAAATTTGCAGTTCAATACCTGACTGCTCTTAGTGGTGGCAGTGGCATCGATGATAGAATCCCACAGGCGAATGTTATACTGGAAGCGTTTGGGAATGCTAAAACCTCCAGAAACAACAATGCCAGCAGATTTTCAAGAGTTGTTCAGCTGGTCAATGGTGAGAGATCATTCCATGTCTTTTATCAACTCTGTGCTGGAGCACCATCTACACTTAAAGGGTCAGACGAGTTGTTTCATGAGATTAGTCGAGGTGCGCAGAAATTGAATATCAGAGTCGCCAGTGACTACAGTTACCTTAATCACAGTGAATGCCTGGTGATTGGTGGTGTGGATGATGCACGGAAATTTCATATTCTTGTGGAAGCCCTAGATATACTTCAATTCACAAAAGAAGATCAAGAGCATGCATTTGGTTTGCTTGCTGCGGTGTTGTGGATAGGAAACATTACGTTTCAAACAATTGATAGTGAAAATCATGTAGAGGTCATGGCTAATGAAGCGGTCGCAAATGCTGCCAAGCTGATGGGTTGCAGTCCTAATGAGCTTAAGTTAGTTTTGTCAACCCACAAAGTGCAATCAGGCAACGATAGCATTGCTAAAAAATTGACATTACGACAGGCAACCGATGCAAGAGATGCTTTGGCAAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAGATCAATAAGTCACTTAAACCAAGAAGGGAGCATTCTGGAAGATCCATAAATATCCTCGACTTCTATGGGTTTGAGTCATTTAAGGCATGTTATTCTATTCATCTATGTGTGTTTTTTTATGCAACAATATGTTATGGTGATTATCTTGCTGTCTCCAAATTCAGAAGAATGGCTTCGAACAGTTTTATGATTCTGGTGCGGTTTGTGTTTAGTATTACTGTAGAGCTGCTTCTAAAGATGAAGGACTACGAATTTAATGGGGTTGATCGCACAAAAGTCAACTTCGAAGACAATCAAGAGTGTTTGAATCTTATTGAGAAGAAACCTCTTGGAGTTCTAGCTTTGTTGGACGAAGAGTTAAATTTTCCCAAGGCTACAGATCTGACATTTGCTAATAAACTAAAGCAACACTTTAAATCTCAATCTCGCTTTAAAGGGGAAAGAGGTAGGGCTTTTGGTGTTCGCCATTATGCTGGAGAGGTTGTATACGACACAAATGGGTTTTTGGAGAAGAATAGAGATCTGCTGCATTCAGATTCCATCCAACTCTTTTCATCATGTACTTGCAAGCTACTGCAATTACTTGCCTCAAAAATGATTAACCATTCCCACAAACCAACAGTTTCAATGTGCTCTACGGAAGTAGTAGAATCCCATGAGCCAGGTGTTGGTACCAAGTACAAGATTCTACTATTTGACCTGTTTCATAAATTGGAACGCACCAGCCATCATTTCATTTGTTGCATAAGGCCAAACAGAAATCAAGTTGGTGGCTTATTTGAGGAGGACCTCGTCTTACAACAGCTTCGGTACTGTGGAATTTTGGAGGTTGTCAGAATTTCAAGATCTGGATATCCTACCAGAATGACGCATCACGAATTTGCTGGAAGGTATGGATTCCTCCTTAAAGAAACTGGTGTATCTCGAGATCCATTGAGTATATCAATTGCTGTTCTGCAACAATTTAATGTCCACCCCGAGATGTACCACCTTGGTTATACCAAACTATTTTTACGAACTGGGCAGATTAGGGCATTGGATGAAAGGAGGAAGCAAGTGATGCAAGGCATCCTAGGGGTACAAAAGTACTTTCGTGGTTGCCATTCCCGTGGCAACTTCCATGATCTTAAGCAAGGGGCCACTACATTACAATCATTTATTCGTGGGGAAAATGCCAGAAGGAGATGTACCATTAAGATGAAGAGGTTCTCATTCGTTGTGTATGCTTTCAGTGTTCCTAAGAAGGTTTATGAACTGCAGGCAATCATACGATTACAATCTGTAATACGTGGTTCGTTGGCTCGAAAGCATTTTCTGAGCATGCGTGATTCAAAGACGGGTTTTCCTGAAAACAAGAAATCTAAACTGAACACAGTCAGAAGGGTTTCAGAGGAAGAATTTCAAGAACGGGTTCAATCCCTGCCAACAACTCTGACTGAGCTTCAAAAGAGGGTCCTGGAGGCAGAAGCAACCATAGAGAAAAAGGAAGGGGAAAATACTGCACTGCGGGAGCAAGTAAAGCAATTCGAGTCTAGGCGGTTAGAATATGAAGCCAAGATGAAGTCCATGGAGGATATGTGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAAAAAGACTCTTGCTGCTGAAAATGTAGCCTGTCCACCTGGAAGAGTTGATGCTGGTAACTCACCACCTCACTATTATGATTCTGAGGACACGACATCAATGGGATCTCGAACACCTGGTGGTACCACACCTATGAAAGCTTCTGGAATTTCTGAAGTTGGAGCAGGCCGAGACATGAATGGTACTTTAGTCGCAGTGAACAATCTTGTAAAGGAATTTGAACAGCGAAGAATTGCATTTGATGATGATGCCAAAGCTTTAGTTGAAGCAAAATCAGGTCAGGCACAGACAGGGTCTAATTTAAATCCAGATGAAGAATACCGTAAAATTAAAGTCCGATTTGAAGCCTGGAAAAAAGAGTACAAGGCAAGATTACGGGAAACAAAAGCTAAGGTTCATCATAAACATGGTCATTTTGAAGTTGATAAACTTCGTCGAAAATGGACATACCTCAAAGAGCTCATCTTGGGAAATGCTTCTGGATCGGCAGAGAGTCCAGCAGTGTCGTATCGTAATCATCTGGAAACTCTAGCCAAATATGGAAATTCTCGAGCCAAATATGAAGAGAAGTCAGCTCGGTTTATGAGCCCCTTTCTGATTCCTTCACCCAATCTCATGAGAAGCAAGCCGCCTGGGCGGGTTGCACAGCAAGATTGCGATGAGCTGGAGCTGCCGTCGGCCTGCTAG 3885 42.32 MMLSASPSTIARSSLEEMLDSLRRRDEIEKPKDLPPALPSRPTSKARIPPVRRALPVNFRVNDDGSSECSINVFNGREDAMRKENGLGNFAFRRIKGDQDDESPYMVASENDNRDQVNGSNGALLSNIQGSNWEDNISYFLQKKLRVWCQLPTGQWELGTIQSNSGVEASVMLSNKKVVKVSTVDLLPANPDIVEGVDDLVQLGYLNEPSVIHSLQRRFSRDKIYSNAGSVLIAVNPLKDTKQYGNGLITAYRQRVMNNPHVYAIADSAYSAMMQDEVNQSIIISGESGAGKTETAKFAVQYLTALSGGSGIDDRIPQANVILEAFGNAKTSRNNNASRFSRVVQLVNGERSFHVFYQLCAGAPSTLKGSDELFHEISRGAQKLNIRVASDYSYLNHSECLVIGGVDDARKFHILVEALDILQFTKEDQEHAFGLLAAVLWIGNITFQTIDSENHVEVMANEAVANAAKLMGCSPNELKLVLSTHKVQSGNDSIAKKLTLRQATDARDALAKFIYASLFDWLVEQINKSLKPRREHSGRSINILDFYGFESFKACYSIHLCVFFYATICYGDYLAVSKFRRMASNSFMILVRFVFSITVELLLKMKDYEFNGVDRTKVNFEDNQECLNLIEKKPLGVLALLDEELNFPKATDLTFANKLKQHFKSQSRFKGERGRAFGVRHYAGEVVYDTNGFLEKNRDLLHSDSIQLFSSCTCKLLQLLASKMINHSHKPTVSMCSTEVVESHEPGVGTKYKILLFDLFHKLERTSHHFICCIRPNRNQVGGLFEEDLVLQQLRYCGILEVVRISRSGYPTRMTHHEFAGRYGFLLKETGVSRDPLSISIAVLQQFNVHPEMYHLGYTKLFLRTGQIRALDERRKQVMQGILGVQKYFRGCHSRGNFHDLKQGATTLQSFIRGENARRRCTIKMKRFSFVVYAFSVPKKVYELQAIIRLQSVIRGSLARKHFLSMRDSKTGFPENKKSKLNTVRRVSEEEFQERVQSLPTTLTELQKRVLEAEATIEKKEGENTALREQVKQFESRRLEYEAKMKSMEDMWQKQMASLQMSLAAAKKTLAAENVACPPGRVDAGNSPPHYYDSEDTTSMGSRTPGGTTPMKASGISEVGAGRDMNGTLVAVNNLVKEFEQRRIAFDDDAKALVEAKSGQAQTGSNLNPDEEYRKIKVRFEAWKKEYKARLRETKAKVHHKHGHFEVDKLRRKWTYLKELILGNASGSAESPAVSYRNHLETLAKYGNSRAKYEEKSARFMSPFLIPSPNLMRSKPPGRVAQQDCDELELPSAC 1294
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 20201696 20214669 - Lsi04G012800.1 Lsi04g01280 661329
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01280 1294 Gene3D - 882 928 - -
Lsi04g01280 1294 ProSiteProfiles Myosin motor domain profile. 195 876 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi04g01280 1294 Pfam IQ calmodulin-binding motif 945 963 IPR000048 GO:0005515
Lsi04g01280 1294 Pfam IQ calmodulin-binding motif 904 921 IPR000048 GO:0005515
Lsi04g01280 1294 Coils Coil 1003 1051 - -
Lsi04g01280 1294 PANTHER MYOSIN-2 ISOFORM X1 341 1214 - -
Lsi04g01280 1294 PANTHER MYOSIN 38 341 - -
Lsi04g01280 1294 PANTHER MYOSIN 341 1214 - -
Lsi04g01280 1294 SMART iq_5 900 922 IPR000048 GO:0005515
Lsi04g01280 1294 SMART iq_5 942 964 IPR000048 GO:0005515
Lsi04g01280 1294 SMART iq_5 877 899 IPR000048 GO:0005515
Lsi04g01280 1294 SMART MYSc_2a 189 877 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi04g01280 1294 Gene3D Myosin VI head, motor domain, U50 subdomain 425 559 - -
Lsi04g01280 1294 PANTHER MYOSIN-2 ISOFORM X1 38 341 - -
Lsi04g01280 1294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 926 IPR027417 -
Lsi04g01280 1294 Gene3D - 592 723 - -
Lsi04g01280 1294 Pfam Myosin head (motor domain) 341 555 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi04g01280 1294 Pfam Myosin head (motor domain) 197 340 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi04g01280 1294 Pfam Myosin head (motor domain) 601 864 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi04g01280 1294 Gene3D - 351 420 - -
Lsi04g01280 1294 MobiDBLite consensus disorder prediction 21 51 - -
Lsi04g01280 1294 PRINTS Myosin heavy chain signature 540 568 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi04g01280 1294 PRINTS Myosin heavy chain signature 225 244 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi04g01280 1294 PRINTS Myosin heavy chain signature 321 348 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi04g01280 1294 PRINTS Myosin heavy chain signature 616 644 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi04g01280 1294 PRINTS Myosin heavy chain signature 279 304 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi04g01280 1294 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 142 191 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lsi04g01280 1294 Gene3D Kinesin motor domain 160 347 IPR036961 -
Lsi04g01280 1294 Gene3D Kinesin motor domain 736 808 IPR036961 -
Lsi04g01280 1294 CDD MYSc_Myo8 209 864 IPR036022 -
Lsi04g01280 1294 Gene3D - 809 877 - -
Lsi04g01280 1294 ProSiteProfiles IQ motif profile. 943 972 IPR000048 GO:0005515
Lsi04g01280 1294 ProSiteProfiles IQ motif profile. 901 929 IPR000048 GO:0005515
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00789 Lsi-Chr4:7408733 Lsi04g01280 Lsi-Chr4:20201696 0 dispersed
Lsi04g00790 Lsi-Chr4:7418949 Lsi04g01280 Lsi-Chr4:20201696 4.18E-44 dispersed
Lsi04g01280 Lsi-Chr4:20201696 Lsi08g00830 Lsi-Chr8:16705509 9.03E-132 dispersed
Lsi04g01280 Lsi-Chr4:20201696 Lsi09g01808 Lsi-Chr9:26861807 7.07E-127 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01280 K10357 - csv:101210624 2006.49