Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g01280 | ATGATGTTATCGGCTTCGCCTTCGACGATAGCTCGAAGCTCACTGGAGGAAATGCTTGATTCTCTTCGACGAAGGGATGAGATTGAGAAGCCTAAAGACTTGCCGCCTGCATTGCCGTCTCGGCCCACTTCGAAGGCTCGGATTCCTCCGGTGAGGCGGGCTTTGCCCGTCAATTTCAGGGTTAATGATGACGGTTCCTCAGAGTGCTCTATTAACGTCTTTAATGGAAGGGAAGATGCAATGAGGAAGGAGAATGGTTTGGGTAACTTTGCATTCAGGAGAATAAAGGGAGATCAAGACGATGAATCACCTTACATGGTAGCTTCAGAAAATGATAATAGAGATCAAGTGAATGGCTCGAATGGCGCTTTACTTTCAAATATTCAAGGGTCTAACTGGGAGGACAATATCAGTTATTTTCTTCAGAAGAAACTCCGGGTTTGGTGTCAACTTCCAACTGGACAATGGGAGTTGGGAACTATACAGTCAAACAGTGGGGTGGAGGCATCTGTCATGCTCTCAAACAAAAAGGTTGTTAAAGTTTCAACTGTAGATCTCTTACCTGCTAATCCAGATATAGTGGAGGGGGTTGATGATCTTGTACAGCTCGGTTATTTGAACGAGCCCTCGGTTATTCACAGTCTCCAGCGAAGATTTTCTCGGGATAAAATTTATAGTAATGCAGGGTCAGTTTTGATTGCAGTCAATCCCTTGAAAGACACTAAACAGTATGGAAATGGATTAATTACAGCCTATAGGCAGAGAGTCATGAACAACCCTCATGTTTATGCTATAGCTGATTCTGCCTATTCTGCAATGATGCAAGATGAAGTTAATCAATCTATTATTATCAGTGGAGAAAGTGGAGCTGGAAAAACTGAGACAGCAAAATTTGCAGTTCAATACCTGACTGCTCTTAGTGGTGGCAGTGGCATCGATGATAGAATCCCACAGGCGAATGTTATACTGGAAGCGTTTGGGAATGCTAAAACCTCCAGAAACAACAATGCCAGCAGATTTTCAAGAGTTGTTCAGCTGGTCAATGGTGAGAGATCATTCCATGTCTTTTATCAACTCTGTGCTGGAGCACCATCTACACTTAAAGGGTCAGACGAGTTGTTTCATGAGATTAGTCGAGGTGCGCAGAAATTGAATATCAGAGTCGCCAGTGACTACAGTTACCTTAATCACAGTGAATGCCTGGTGATTGGTGGTGTGGATGATGCACGGAAATTTCATATTCTTGTGGAAGCCCTAGATATACTTCAATTCACAAAAGAAGATCAAGAGCATGCATTTGGTTTGCTTGCTGCGGTGTTGTGGATAGGAAACATTACGTTTCAAACAATTGATAGTGAAAATCATGTAGAGGTCATGGCTAATGAAGCGGTCGCAAATGCTGCCAAGCTGATGGGTTGCAGTCCTAATGAGCTTAAGTTAGTTTTGTCAACCCACAAAGTGCAATCAGGCAACGATAGCATTGCTAAAAAATTGACATTACGACAGGCAACCGATGCAAGAGATGCTTTGGCAAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAGATCAATAAGTCACTTAAACCAAGAAGGGAGCATTCTGGAAGATCCATAAATATCCTCGACTTCTATGGGTTTGAGTCATTTAAGGCATGTTATTCTATTCATCTATGTGTGTTTTTTTATGCAACAATATGTTATGGTGATTATCTTGCTGTCTCCAAATTCAGAAGAATGGCTTCGAACAGTTTTATGATTCTGGTGCGGTTTGTGTTTAGTATTACTGTAGAGCTGCTTCTAAAGATGAAGGACTACGAATTTAATGGGGTTGATCGCACAAAAGTCAACTTCGAAGACAATCAAGAGTGTTTGAATCTTATTGAGAAGAAACCTCTTGGAGTTCTAGCTTTGTTGGACGAAGAGTTAAATTTTCCCAAGGCTACAGATCTGACATTTGCTAATAAACTAAAGCAACACTTTAAATCTCAATCTCGCTTTAAAGGGGAAAGAGGTAGGGCTTTTGGTGTTCGCCATTATGCTGGAGAGGTTGTATACGACACAAATGGGTTTTTGGAGAAGAATAGAGATCTGCTGCATTCAGATTCCATCCAACTCTTTTCATCATGTACTTGCAAGCTACTGCAATTACTTGCCTCAAAAATGATTAACCATTCCCACAAACCAACAGTTTCAATGTGCTCTACGGAAGTAGTAGAATCCCATGAGCCAGGTGTTGGTACCAAGTACAAGATTCTACTATTTGACCTGTTTCATAAATTGGAACGCACCAGCCATCATTTCATTTGTTGCATAAGGCCAAACAGAAATCAAGTTGGTGGCTTATTTGAGGAGGACCTCGTCTTACAACAGCTTCGGTACTGTGGAATTTTGGAGGTTGTCAGAATTTCAAGATCTGGATATCCTACCAGAATGACGCATCACGAATTTGCTGGAAGGTATGGATTCCTCCTTAAAGAAACTGGTGTATCTCGAGATCCATTGAGTATATCAATTGCTGTTCTGCAACAATTTAATGTCCACCCCGAGATGTACCACCTTGGTTATACCAAACTATTTTTACGAACTGGGCAGATTAGGGCATTGGATGAAAGGAGGAAGCAAGTGATGCAAGGCATCCTAGGGGTACAAAAGTACTTTCGTGGTTGCCATTCCCGTGGCAACTTCCATGATCTTAAGCAAGGGGCCACTACATTACAATCATTTATTCGTGGGGAAAATGCCAGAAGGAGATGTACCATTAAGATGAAGAGGTTCTCATTCGTTGTGTATGCTTTCAGTGTTCCTAAGAAGGTTTATGAACTGCAGGCAATCATACGATTACAATCTGTAATACGTGGTTCGTTGGCTCGAAAGCATTTTCTGAGCATGCGTGATTCAAAGACGGGTTTTCCTGAAAACAAGAAATCTAAACTGAACACAGTCAGAAGGGTTTCAGAGGAAGAATTTCAAGAACGGGTTCAATCCCTGCCAACAACTCTGACTGAGCTTCAAAAGAGGGTCCTGGAGGCAGAAGCAACCATAGAGAAAAAGGAAGGGGAAAATACTGCACTGCGGGAGCAAGTAAAGCAATTCGAGTCTAGGCGGTTAGAATATGAAGCCAAGATGAAGTCCATGGAGGATATGTGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAAAAAGACTCTTGCTGCTGAAAATGTAGCCTGTCCACCTGGAAGAGTTGATGCTGGTAACTCACCACCTCACTATTATGATTCTGAGGACACGACATCAATGGGATCTCGAACACCTGGTGGTACCACACCTATGAAAGCTTCTGGAATTTCTGAAGTTGGAGCAGGCCGAGACATGAATGGTACTTTAGTCGCAGTGAACAATCTTGTAAAGGAATTTGAACAGCGAAGAATTGCATTTGATGATGATGCCAAAGCTTTAGTTGAAGCAAAATCAGGTCAGGCACAGACAGGGTCTAATTTAAATCCAGATGAAGAATACCGTAAAATTAAAGTCCGATTTGAAGCCTGGAAAAAAGAGTACAAGGCAAGATTACGGGAAACAAAAGCTAAGGTTCATCATAAACATGGTCATTTTGAAGTTGATAAACTTCGTCGAAAATGGACATACCTCAAAGAGCTCATCTTGGGAAATGCTTCTGGATCGGCAGAGAGTCCAGCAGTGTCGTATCGTAATCATCTGGAAACTCTAGCCAAATATGGAAATTCTCGAGCCAAATATGAAGAGAAGTCAGCTCGGTTTATGAGCCCCTTTCTGATTCCTTCACCCAATCTCATGAGAAGCAAGCCGCCTGGGCGGGTTGCACAGCAAGATTGCGATGAGCTGGAGCTGCCGTCGGCCTGCTAG | 3885 | 42.32 | MMLSASPSTIARSSLEEMLDSLRRRDEIEKPKDLPPALPSRPTSKARIPPVRRALPVNFRVNDDGSSECSINVFNGREDAMRKENGLGNFAFRRIKGDQDDESPYMVASENDNRDQVNGSNGALLSNIQGSNWEDNISYFLQKKLRVWCQLPTGQWELGTIQSNSGVEASVMLSNKKVVKVSTVDLLPANPDIVEGVDDLVQLGYLNEPSVIHSLQRRFSRDKIYSNAGSVLIAVNPLKDTKQYGNGLITAYRQRVMNNPHVYAIADSAYSAMMQDEVNQSIIISGESGAGKTETAKFAVQYLTALSGGSGIDDRIPQANVILEAFGNAKTSRNNNASRFSRVVQLVNGERSFHVFYQLCAGAPSTLKGSDELFHEISRGAQKLNIRVASDYSYLNHSECLVIGGVDDARKFHILVEALDILQFTKEDQEHAFGLLAAVLWIGNITFQTIDSENHVEVMANEAVANAAKLMGCSPNELKLVLSTHKVQSGNDSIAKKLTLRQATDARDALAKFIYASLFDWLVEQINKSLKPRREHSGRSINILDFYGFESFKACYSIHLCVFFYATICYGDYLAVSKFRRMASNSFMILVRFVFSITVELLLKMKDYEFNGVDRTKVNFEDNQECLNLIEKKPLGVLALLDEELNFPKATDLTFANKLKQHFKSQSRFKGERGRAFGVRHYAGEVVYDTNGFLEKNRDLLHSDSIQLFSSCTCKLLQLLASKMINHSHKPTVSMCSTEVVESHEPGVGTKYKILLFDLFHKLERTSHHFICCIRPNRNQVGGLFEEDLVLQQLRYCGILEVVRISRSGYPTRMTHHEFAGRYGFLLKETGVSRDPLSISIAVLQQFNVHPEMYHLGYTKLFLRTGQIRALDERRKQVMQGILGVQKYFRGCHSRGNFHDLKQGATTLQSFIRGENARRRCTIKMKRFSFVVYAFSVPKKVYELQAIIRLQSVIRGSLARKHFLSMRDSKTGFPENKKSKLNTVRRVSEEEFQERVQSLPTTLTELQKRVLEAEATIEKKEGENTALREQVKQFESRRLEYEAKMKSMEDMWQKQMASLQMSLAAAKKTLAAENVACPPGRVDAGNSPPHYYDSEDTTSMGSRTPGGTTPMKASGISEVGAGRDMNGTLVAVNNLVKEFEQRRIAFDDDAKALVEAKSGQAQTGSNLNPDEEYRKIKVRFEAWKKEYKARLRETKAKVHHKHGHFEVDKLRRKWTYLKELILGNASGSAESPAVSYRNHLETLAKYGNSRAKYEEKSARFMSPFLIPSPNLMRSKPPGRVAQQDCDELELPSAC | 1294 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 20201696 | 20214669 | - | Lsi04G012800.1 | Lsi04g01280 | 661329 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g01280 | 1294 | Gene3D | - | 882 | 928 | - | - | |
| Lsi04g01280 | 1294 | ProSiteProfiles | Myosin motor domain profile. | 195 | 876 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi04g01280 | 1294 | Pfam | IQ calmodulin-binding motif | 945 | 963 | IPR000048 | GO:0005515 | |
| Lsi04g01280 | 1294 | Pfam | IQ calmodulin-binding motif | 904 | 921 | IPR000048 | GO:0005515 | |
| Lsi04g01280 | 1294 | Coils | Coil | 1003 | 1051 | - | - | |
| Lsi04g01280 | 1294 | PANTHER | MYOSIN-2 ISOFORM X1 | 341 | 1214 | - | - | |
| Lsi04g01280 | 1294 | PANTHER | MYOSIN | 38 | 341 | - | - | |
| Lsi04g01280 | 1294 | PANTHER | MYOSIN | 341 | 1214 | - | - | |
| Lsi04g01280 | 1294 | SMART | iq_5 | 900 | 922 | IPR000048 | GO:0005515 | |
| Lsi04g01280 | 1294 | SMART | iq_5 | 942 | 964 | IPR000048 | GO:0005515 | |
| Lsi04g01280 | 1294 | SMART | iq_5 | 877 | 899 | IPR000048 | GO:0005515 | |
| Lsi04g01280 | 1294 | SMART | MYSc_2a | 189 | 877 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi04g01280 | 1294 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 425 | 559 | - | - | |
| Lsi04g01280 | 1294 | PANTHER | MYOSIN-2 ISOFORM X1 | 38 | 341 | - | - | |
| Lsi04g01280 | 1294 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 175 | 926 | IPR027417 | - | |
| Lsi04g01280 | 1294 | Gene3D | - | 592 | 723 | - | - | |
| Lsi04g01280 | 1294 | Pfam | Myosin head (motor domain) | 341 | 555 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi04g01280 | 1294 | Pfam | Myosin head (motor domain) | 197 | 340 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi04g01280 | 1294 | Pfam | Myosin head (motor domain) | 601 | 864 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi04g01280 | 1294 | Gene3D | - | 351 | 420 | - | - | |
| Lsi04g01280 | 1294 | MobiDBLite | consensus disorder prediction | 21 | 51 | - | - | |
| Lsi04g01280 | 1294 | PRINTS | Myosin heavy chain signature | 540 | 568 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi04g01280 | 1294 | PRINTS | Myosin heavy chain signature | 225 | 244 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi04g01280 | 1294 | PRINTS | Myosin heavy chain signature | 321 | 348 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi04g01280 | 1294 | PRINTS | Myosin heavy chain signature | 616 | 644 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi04g01280 | 1294 | PRINTS | Myosin heavy chain signature | 279 | 304 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi04g01280 | 1294 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 142 | 191 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi04g01280 | 1294 | Gene3D | Kinesin motor domain | 160 | 347 | IPR036961 | - | |
| Lsi04g01280 | 1294 | Gene3D | Kinesin motor domain | 736 | 808 | IPR036961 | - | |
| Lsi04g01280 | 1294 | CDD | MYSc_Myo8 | 209 | 864 | IPR036022 | - | |
| Lsi04g01280 | 1294 | Gene3D | - | 809 | 877 | - | - | |
| Lsi04g01280 | 1294 | ProSiteProfiles | IQ motif profile. | 943 | 972 | IPR000048 | GO:0005515 | |
| Lsi04g01280 | 1294 | ProSiteProfiles | IQ motif profile. | 901 | 929 | IPR000048 | GO:0005515 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g00789 | Lsi-Chr4:7408733 | Lsi04g01280 | Lsi-Chr4:20201696 | 0 | dispersed | |
| Lsi04g00790 | Lsi-Chr4:7418949 | Lsi04g01280 | Lsi-Chr4:20201696 | 4.18E-44 | dispersed | |
| Lsi04g01280 | Lsi-Chr4:20201696 | Lsi08g00830 | Lsi-Chr8:16705509 | 9.03E-132 | dispersed | |
| Lsi04g01280 | Lsi-Chr4:20201696 | Lsi09g01808 | Lsi-Chr9:26861807 | 7.07E-127 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g01280 | K10357 | - | csv:101210624 | 2006.49 |