Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01282 ATGAAGTCCCAGTTGCTTGGTTTTTTAGTGATATTAGAAGGGCTTCTTAAGCTGCCAGAAAATAGGGAGTGTGCTGATTGCAAAGCTAAGGGACCAAGATGGGCTAGTGTTAATTTAGGCATTTTTATATGTACGGTCTGCTACCTTGGATACTTGGCTTCCAGAGCAGCAATGGGGAATGAGAAGGCAAACAGTTATTGGGAGGCGGAGCTACCACCAAATTATGACAGAGTTGGGATTGAGAATTTTATTCGTGCAAAATATGAAGACAAGAGATGGGTTCCTAAGGATGGCAAACCAAGATCACCATCTCGAGTACAGGAGGAAAAGCCTTCTTTCCATGGGCAGAGGCCCGCAGAAAGAAGTGGGACAGGGTATTCAGGCCATGCGGAAAATTTGTTCGAGGAAAGGAAGAGAGTTCAAACTCATAGTGTGAAGGAGAGTATACCTGCCTCGAAAGTTAGTCTTCCTGTTCCTCCCAGAGGACCTGAACAAGCCATCAATAATGTATTTCGTGATGTACCTATAAAAATGACGGTCATCATGCATTCCCCTTCGGCCTTCACAAACTACTCATTTTGGTTTTGTTTGGTTGTTTGGTCTGAGGACCAAACTGGTGTTGCTCCAGCCCCCAAACCACGTCAAGAGCAAAAACCTGAACCAGTTGTACAGCAAACTGAAGCAACGAAACAGACTACAAATGATGCCCCAGCTGTCTCTCCTCCAAAAGTTGATTATGCTACTGATCTTTTTAACATGCTATCGTTTGATGGTCCCTCTGATAATGGTTCAGCAGCAGTTTCTACAGATGATAGTGCATGGGCTGGCTTTCAGTCTGCTGAAGAAGCATCAGCAGCAGAGAAACCTGGTCCAGCAAAACCAGCTGAAGCCGTTACCCAATCCGCTTCTGGAATTGAGGATCTTTTCAAAGATACAACTACAGTTTCACCTTGTTTAGTTCCCGAAAAACCTGTAAAAGATGTTAAAACTGATATAATGAGTCTTTTCGAAAAGTCCAGTATGGTCTCTCCATTTGCTATGCATCAACAGCAACTTGCCATGCTAGCTCAGCAACAATCACTTCTCATGGCTGCTGCAGCTAAATCAGCTGCTGGGGACGTGAAATTTAACAATACTACTCATCAACAGCAACTTGCCATGCTAGCTCAGCAACAATCACTCCTCATGGCTGCTGCAGCTAAGTCAGCTGCTGGGGACGCAAAATTTAGCAATACTCAAACCTCTGTCCCCAATGGTACCAATGTTCCTCCTCAAAGTTGGCCAAATGTTGCCTACCCGATTCCTGGATTGATGATGCAAATAGGTCCCCAGGGTGGGCCACAAACTACAGTGCAGGCAATGAACAGGGGGCTGGCAAATCCAGTTGGGAGTTCTGTTCCATATCCAACATCTGGCCTTTATAGCCTCGGCCAAGTTTCTTCAGTGCCGGTGAATGGTGTGACCCCCCCAGCAAAAAATAAGCCTCAATCGACAGCATCAGTATCATCAGCTACTCCTTCGCAGTCGGGAAAGGAGTATGATTTCTCCTCTTTAACACAAGGTATGTTTTCAAAACATTAA 1581 45.1 MKSQLLGFLVILEGLLKLPENRECADCKAKGPRWASVNLGIFICTVCYLGYLASRAAMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWVPKDGKPRSPSRVQEEKPSFHGQRPAERSGTGYSGHAENLFEERKRVQTHSVKESIPASKVSLPVPPRGPEQAINNVFRDVPIKMTVIMHSPSAFTNYSFWFCLVVWSEDQTGVAPAPKPRQEQKPEPVVQQTEATKQTTNDAPAVSPPKVDYATDLFNMLSFDGPSDNGSAAVSTDDSAWAGFQSAEEASAAEKPGPAKPAEAVTQSASGIEDLFKDTTTVSPCLVPEKPVKDVKTDIMSLFEKSSMVSPFAMHQQQLAMLAQQQSLLMAAAAKSAAGDVKFNNTTHQQQLAMLAQQQSLLMAAAAKSAAGDAKFSNTQTSVPNGTNVPPQSWPNVAYPIPGLMMQIGPQGGPQTTVQAMNRGLANPVGSSVPYPTSGLYSLGQVSSVPVNGVTPPAKNKPQSTASVSSATPSQSGKEYDFSSLTQGMFSKH 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20241871 20247773 - Lsi04G012820.1 Lsi04g01282 661331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01282 526 MobiDBLite consensus disorder prediction 94 116 - -
Lsi04g01282 526 MobiDBLite consensus disorder prediction 206 242 - -
Lsi04g01282 526 SUPERFAMILY ArfGap/RecO-like zinc finger 11 96 IPR037278 -
Lsi04g01282 526 CDD ArfGap 12 88 - -
Lsi04g01282 526 Gene3D Arf GTPase activating protein 51 100 IPR038508 -
Lsi04g01282 526 SMART arf_gap_3 13 101 IPR001164 GO:0005096
Lsi04g01282 526 MobiDBLite consensus disorder prediction 139 160 - -
Lsi04g01282 526 ProSiteProfiles ARF GTPase-activating proteins domain profile. 9 97 IPR001164 GO:0005096
Lsi04g01282 526 MobiDBLite consensus disorder prediction 219 238 - -
Lsi04g01282 526 MobiDBLite consensus disorder prediction 94 127 - -
Lsi04g01282 526 MobiDBLite consensus disorder prediction 485 526 - -
Lsi04g01282 526 MobiDBLite consensus disorder prediction 279 300 - -
Lsi04g01282 526 Pfam Putative GTPase activating protein for Arf 12 48 IPR001164 GO:0005096
Lsi04g01282 526 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 379 526 IPR044520 GO:0005096
Lsi04g01282 526 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 11 47 IPR044520 GO:0005096
Lsi04g01282 526 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 57 378 IPR044520 GO:0005096
Lsi04g01282 526 Gene3D Arf GTPase activating protein 9 49 IPR038508 -
Lsi04g01282 526 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 379 526 - -
Lsi04g01282 526 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 11 47 - -
Lsi04g01282 526 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 57 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01282 K12486 SMAP; stromal membrane-associated protein - csv:101214277 716.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00263 Lsi-Chr2:2249148 Lsi04g01282 Lsi-Chr4:20241871 6.80E-34 dispersed
Lsi04g01282 Lsi-Chr4:20241871 Lsi01g00082 Lsi-Chr1:798897 1.04E-09 dispersed
Lsi04g01282 Lsi-Chr4:20241871 Lsi02g00943 Lsi-Chr2:9334771 2.17E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g290 . . . . . . . . . . . . Car01g01000 . . Cpe06g00717 Cpe02g00724 . . . . . . . Cla11g01802 Cam11g1868 Cec11g1892 Cco11g1898 Clacu11g2031 Cmu11g1836 Cre11g2243 Cone6ag0115 Cone9ag0133 . . Lsi04g01282 . . . . . . . Bpe11g00502 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005696 1 1 2 2 2 0 2 1 0 1 1 1 1 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01282 Lsi_Chr04 FPKM 18.168674 20.582804 10.208259 7.773156 6.555226 0.0 10.936769 5.432147 4.96815 5.892359