Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01284 ATGTGGGGCTTATCCTGCTCTTTGCTTCCTTATCCGTCGCCTAATTTCAGAGCGTCCGTTCCGGCAGCGGCAGCAACCCTTCGCACCGACACTTCTTTACCGGTGCCCCTCGATCGGAAACATTACACTTCCGACTCCCCATTTGCTCCGGAGGTTATTAAGGCGGTAGACTCCTTGCAGTATGAATTCAGGGCAGTGGATAATTTGGTGGCACGTAATTCTGCTAAAGTTCTCAAAGCCTTTCAGAATGCTCGGTTAGGATCTCATCATTTTGGAGGATCCACTGGTTATGGTCATGATGAAGCTGGAGGACGTGAGGCACTTGACAACGCTTTTGCTGAGATAGTTGGAGCAGAATCTGCAATAGTCCGATCACAGTTTTTCTCAGGTACTCATGCTATTACGTGTGCTTTATTTGCACTTTTGAGGCCAGGGGATGAGCTTTTGGCAGTAGCTGGTGCTCCATATGACACACTAGAGGAGGTCATTGGGAAAAGAGATTCTCAGGGGCTGGGTTCCTTGAAAGATTTTGGAGTAGAGTATCGAGAAGTTCCACTTGCTGATGACGGTGGACTCGACTGGGAAAAACTTGCAAGTGCTTTGAAACCTCAGACAAAATGTGCGCTCATACAAAGGTCATGTGGTTATTCTTGGCGGCGAAGTTTAAGTGTTGACGAAATAGGAAAAGCAATAAGACTGATCAAGATGCAAAACCCTGATTGCTTGGTGATGGTGGATAACTGTTATGGAGAATTTGTGGAAACCACTGAACCTCCAACTGTGGTAAGAAGTTTGATAAAAAATCCTGGTGGAACGCTTGCACCTTGTGGCGGATATGTTGCAGGTCGAGACAAATGGGTGAAAGCGGCTGCAGCTCGTTTGTCTGCACCCGGCTTGGGGGTGGATTCGGGCTCTACCCCTGGTGATATCATGAGGACATTTTTTCAAGGATTATTCCTTTCACCTCAAATGGTTGGTGAGGCAGTTAAGGCTGTACAACTTGGAAGTCGTGAAGTTTTGCTTGCATTCTGCGAGGCTGTACAGAGAAGCTCTCCTGTCGCTTCGTTTACTAAACCGGTTCCGGGAATAACTCCTGGATATGCATCAGAGGTGATCTTTGCTGATGGAACTTTTATTGATGGGAGCACAAGTGAACTTTCTTGTGATGGACCTCTAAGAGAGCCATTTGCAGTCTTTTGCCAGGGTGGAACACATTGGACCCAGTGGGGCTTAGTTCTAGGAGAGATTGCTGCTGATGTAGTATTTCTAAATGATTTATGCCTATTAAGCGAAGTTATATCTCATTTCTTGGTAACCGCAGTGGTTAACATATCAGCAGTCACAATGGATTATGGACAGATGATTTTTCTTGGAGTTACTTCCTCTGTTGTTCTCACTGCAATATTTTCATTATGGCTCCTTACCCAACATCTGTCTAACTGGAAAAAACCAGCGGAACAAAAGGCCATTGTTATTATAATTCTTATGGCTCCTTTATATGCTGGTATCTCCTATATTGGTCTGTTGGAATTTATGGCAAGCAGTACTTTCTTTTTGTTTTTGGAATCAATTAAGGAATGTTATGAGGCTTTGGTGATATCTAAGTTCTTGAGTTTACTCTACAGCTACTTAAATATATCCATAAGCAAAAACATTGTGCCAGATGAGATCAAAGGTAGAGAAATTCACCATACTTTTCCGATGACCCTCTTTCAGCTGTGGGTCTTAAGTTTACAGCTTAGTAAAACTAAACCAGTCACTGTATTTATTTGGGTTTTATTGGATGATCAGAGAGTGACTTTGAATGTTGACTCCCTATCAACTGCAGCCTCACAGTGCTCGATTGAATCATCACACGTTGAAGCTTCTCAAGAACTGGACCTATCAATTCGTGGTGATTCGTCCTTGTCGCTTGCTCTGTATTCCCTGGTGGTTTTCTATCATGTATTTGATAAGGAGTTGAAACCACATAGCCCTCTTGCGAAGTTCTTGTGCATCAAAGGGATTGTCTTCTTCTGCTTCTGGCAGGGAATTGTTCTTGAGATGCTTGCTGCAGTGGGCATAATCAAAGCAGAACACGCTTGGTTTGATGTTGAGCACATAAATGAAGCCTTACAAAACACTCTAGTTTGTGTGGAGATGGTTTTCTTTGCAATGATTCAGATGTCTGCATACAGTGCTAGCCCTTACAAATCTAAATCTGCAGCAAAACCTAAACTGGAGAAGAAGGAACAGTGA 2238 43.57 MWGLSCSLLPYPSPNFRASVPAAAATLRTDTSLPVPLDRKHYTSDSPFAPEVIKAVDSLQYEFRAVDNLVARNSAKVLKAFQNARLGSHHFGGSTGYGHDEAGGREALDNAFAEIVGAESAIVRSQFFSGTHAITCALFALLRPGDELLAVAGAPYDTLEEVIGKRDSQGLGSLKDFGVEYREVPLADDGGLDWEKLASALKPQTKCALIQRSCGYSWRRSLSVDEIGKAIRLIKMQNPDCLVMVDNCYGEFVETTEPPTVVRSLIKNPGGTLAPCGGYVAGRDKWVKAAAARLSAPGLGVDSGSTPGDIMRTFFQGLFLSPQMVGEAVKAVQLGSREVLLAFCEAVQRSSPVASFTKPVPGITPGYASEVIFADGTFIDGSTSELSCDGPLREPFAVFCQGGTHWTQWGLVLGEIAADVVFLNDLCLLSEVISHFLVTAVVNISAVTMDYGQMIFLGVTSSVVLTAIFSLWLLTQHLSNWKKPAEQKAIVIIILMAPLYAGISYIGLLEFMASSTFFLFLESIKECYEALVISKFLSLLYSYLNISISKNIVPDEIKGREIHHTFPMTLFQLWVLSLQLSKTKPVTVFIWVLLDDQRVTLNVDSLSTAASQCSIESSHVEASQELDLSIRGDSSLSLALYSLVVFYHVFDKELKPHSPLAKFLCIKGIVFFCFWQGIVLEMLAAVGIIKAEHAWFDVEHINEALQNTLVCVEMVFFAMIQMSAYSASPYKSKSAAKPKLEKKEQ 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20264860 20277753 - Lsi04G012840.1 Lsi04g01284 661333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01284 745 Pfam Methionine gamma-lyase 54 333 IPR009651 -
Lsi04g01284 745 Pfam Organic solute transporter Ostalpha 460 730 IPR005178 -
Lsi04g01284 745 SUPERFAMILY PLP-dependent transferases 59 328 IPR015424 -
Lsi04g01284 745 Gene3D - 100 305 IPR015421 GO:0003824
Lsi04g01284 745 Gene3D - 49 99 - -
Lsi04g01284 745 Gene3D - 327 422 - -
Lsi04g01284 745 PANTHER - 329 418 IPR009651 -
Lsi04g01284 745 PANTHER - 4 331 IPR009651 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01284 - - - csv:101215148 754.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01284 Lsi-Chr4:20264860 Lsi08g00526 Lsi-Chr8:13203288 5.96E-22 dispersed
Lsi02g00708 Lsi-Chr2:6341711 Lsi04g01284 Lsi-Chr4:20264860 2.39E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g284 . Blo03g01523 . . . . . . . . . . . . . Cpe06g00715 . Bhi09g01998 Tan01g4450 . . Hepe01g1356 Mch11g1110 . Cla11g01800 Cam11g1866 Cec11g1890 Cco11g1896 Clacu11g2029 Cmu11g1835 Cre11g2242 . . . . Lsi04g01284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006193 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 5 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01284 Lsi_Chr04 FPKM 8.556364 10.084301 10.982972 10.733685 8.373332 6.550355 8.988476 16.686274 15.847383 15.606521