Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01286 ATGGGAACGTGTTGTAGAATGATGGATAGAACCGCTGGTTTAGTTTTGAAGCGTTCCTTGCGAAAGAAAGCTACTTCGCGAAATTATGACGAGGATTTAATGGATGACTTTGTAGAAAAGCATTTAGGGGGTGTTTCGAAGAAGAAGAAGAAGAGCAAAACGGCAGAGGATCTAGAGAAAGAGACTGAAATTGAGGCTATGATAGCACTATCGGTTGGATTCCCAATTGATGCCCTGCTTGAGGAGGAAATTAAAGCAGGGGTGGTGAAGAAATTGGGTGGGAAAGAGCAGAACGATTACATTGTTGTTAGAAATCATATCCTTGCGAGATGGCGGGGTAATGTACGAATGTGGCTTTCGAAAGGGCAGATTAAAGAAACTGTGAGCAATGAGTATGAACATTTGATTAGTGCAGCATATGATTTCCTTCTGTACAATGGATATATAAACTTTGGTGTTTCACCAACCTTTACATCTCAAGTGTCAGAGGAGGGATATGAAGGAACTGTGATTATTATCGGTGCAGGCCTTGCTGGATTAGCTGCGGCGCGGCAGCTATTATCATTTGGATTTAAGGTTATTGTTTTAGAAGGTAGGAATCGGCCTGGTGGAAGAGTTTATACACAAAAGATGGGGCAGGAGGGCAAATTTGCTGCTGTAGATCTTGGTGGCAGTGTCATTACTGGTATCCATGCTAATCCTCTCGGAGTTCTAGCTAGACAACTTTCCATTCCACTTCATAAGGTTAGAGATAATTGTCCATTGTATAAACCTGATGGGACACTGATTGGAAAGGATATTGATGCTAAGATTGAGTTTATTTTTAATAAATTGCTAGACAAAGTGACTGAACTGAGAAAGATTATGGGAGGATTGGCAAATAACATTTCTCTTGGAACCGTTCTAGAAAAACTCAGGCAATTGTATGCTGTGGCTCGGAGTACGGATGAAAGACAACTTCTTGATTGGCATATAGCAAACTTGGAATACGCAAATGCAGGATGTGTTTCAAATTTGTCTGCTGTGCATTGGGATCAAGATGATCCTTATGAAATGGGCGGCGACCATTGCTTCCTAGCAGGAGGTAATTGGAGATTGATAAAAGCATTATGTGAAGGAGTTCCAATATTTTATGGGCAGGTTGTTGACACTATTAAATATGGAAGTGAAGGAGTAGAAGTAATAGCTGGAGATCAAGTGTTTCAAGCGGATATGGTCCTGTGCACGGTTCCACTTGGGGTTCTGAAGCGAAAGCATATCAGATTTGAACCAGAGTTACCTAAAAGGAAACTGGCAGCAATTGAACGACTGGGTTTTGGATTATTGAATAAAGTTGCAATGGCTTTTCCTCATGTTTTCTGGGGGGAAGACCTAGATACATTTGGATGTCTTAGAGAGCATTGCCATCAGCGTGGGGAGTTCTTTTTGTTTTATGGTTATCATACTGTTTCTGGAGGTGCAGTTCTTATAGCTCTAGTTGCTGGAGAAGCTGCTGAAGCGTTTGAATGCACGGATCCAACCGTGTTGCTCCACCGGGTTCTTGGAATTCTCAGAGGCATATTCAGCCCCAAGGGGATTGACGTGCCAAATCCAATACAGACAATATGCACAAGATGGGGCAGCGATCCATTTTCTTACGGTTCATACTCTCATGTTCGGGTGGGGTCCACTGGCAGCGATTACGACATTCTTGCAGAGAGTGTGTGGAACAGATTATTCTTTGCCGGTGAGGCCACAACTAAGCAATATCCAGCCACCATGCATGGTGCCTTCTTGAGTGGGCTAAGAGAAGCTTCATGTATTTACCAAGCAACTCGGGGACGATCAAACAATTCAAGGAAGTATATGCTGAAAAGTCTCAGACATGATATTCTGGCGGATCTTTTCAGGAAACCTGACATTGAAGTTGGAAATCTGTCCTTTATTTTCAATTCCTTGGTAGATGATGAAAAATCAATGGGGGTCATGAAAATCACATTCAGAGGCAAGGGAGAAAGTTCTAACGACGAAGAATTGGCAGACGATTGTGAAGACCCGTCACAACAACAGCTGCTGCTCTACACAATTGTATCCCGCGAACAGGCACGTGAGCTGCAACTTGCGATTGGAGAGGATGAAAGTAGACTGCCATATCTAGTGAAAGATTTTGGCTTAAAGCTGATGGGACCTAGTGCCTTGGCTAATATCGGTAACTCGTTGATTTCTAGTATTGCCGGTGCTCGAAGAGGCCGGGGTAGAAATCGGTTGTCTGCTGGACAACCACAACTGCAACCCCAATCCGAACCACAACCACAAATGCAAGCCCAGCCCCAGCCCCAACCACAACCTGAGTCCCAGCCCCAACCACAACTGCAGGCCCAGTCACAATATCAACCCGAGCCCCAGCCCCAACCACAACTGCAGGTCCAGCCACAATATCAACCCGAGCCCCAGCCCCAACCACTACTGCAACCCCAACCCCAACTACAACTACAACCCCAGCCCCAACTGCAACTGCGTCCGCAGCCACAGCTCCAAACCCAACTGCAACTCCAGCCTCAATCACAACTACCGCTGCAACCACAACCACAACCACAAATCTAA 2583 44.87 MGTCCRMMDRTAGLVLKRSLRKKATSRNYDEDLMDDFVEKHLGGVSKKKKKSKTAEDLEKETEIEAMIALSVGFPIDALLEEEIKAGVVKKLGGKEQNDYIVVRNHILARWRGNVRMWLSKGQIKETVSNEYEHLISAAYDFLLYNGYINFGVSPTFTSQVSEEGYEGTVIIIGAGLAGLAAARQLLSFGFKVIVLEGRNRPGGRVYTQKMGQEGKFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGTLIGKDIDAKIEFIFNKLLDKVTELRKIMGGLANNISLGTVLEKLRQLYAVARSTDERQLLDWHIANLEYANAGCVSNLSAVHWDQDDPYEMGGDHCFLAGGNWRLIKALCEGVPIFYGQVVDTIKYGSEGVEVIAGDQVFQADMVLCTVPLGVLKRKHIRFEPELPKRKLAAIERLGFGLLNKVAMAFPHVFWGEDLDTFGCLREHCHQRGEFFLFYGYHTVSGGAVLIALVAGEAAEAFECTDPTVLLHRVLGILRGIFSPKGIDVPNPIQTICTRWGSDPFSYGSYSHVRVGSTGSDYDILAESVWNRLFFAGEATTKQYPATMHGAFLSGLREASCIYQATRGRSNNSRKYMLKSLRHDILADLFRKPDIEVGNLSFIFNSLVDDEKSMGVMKITFRGKGESSNDEELADDCEDPSQQQLLLYTIVSREQARELQLAIGEDESRLPYLVKDFGLKLMGPSALANIGNSLISSIAGARRGRGRNRLSAGQPQLQPQSEPQPQMQAQPQPQPQPESQPQPQLQAQSQYQPEPQPQPQLQVQPQYQPEPQPQPLLQPQPQLQLQPQPQLQLRPQPQLQTQLQLQPQSQLPLQPQPQPQI 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20294340 20297074 - Lsi04G012860.1 Lsi04g01286 661335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01286 860 MobiDBLite consensus disorder prediction 780 796 - -
Lsi04g01286 860 MobiDBLite consensus disorder prediction 797 821 - -
Lsi04g01286 860 Gene3D - 65 163 IPR036388 -
Lsi04g01286 860 MobiDBLite consensus disorder prediction 765 779 - -
Lsi04g01286 860 SUPERFAMILY FAD/NAD(P)-binding domain 169 604 IPR036188 -
Lsi04g01286 860 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 43 744 - -
Lsi04g01286 860 Gene3D - 170 599 IPR036188 -
Lsi04g01286 860 Gene3D - 252 557 - -
Lsi04g01286 860 MobiDBLite consensus disorder prediction 743 860 - -
Lsi04g01286 860 PANTHER FLAVIN MONOAMINE OXIDASE 43 744 - -
Lsi04g01286 860 SUPERFAMILY Homeodomain-like 61 160 IPR009057 -
Lsi04g01286 860 SUPERFAMILY FAD-linked reductases, C-terminal domain 438 550 - -
Lsi04g01286 860 MobiDBLite consensus disorder prediction 822 850 - -
Lsi04g01286 860 Pfam SWIRM domain 79 151 IPR007526 GO:0005515
Lsi04g01286 860 Pfam Flavin containing amine oxidoreductase 177 601 IPR002937 GO:0016491
Lsi04g01286 860 MobiDBLite consensus disorder prediction 750 764 - -
Lsi04g01286 860 ProSiteProfiles SWIRM domain profile. 59 160 IPR007526 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01286 - - - csv:101217308 1400.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01286 Lsi-Chr4:20294340 Lsi08g00698 Lsi-Chr8:15280007 0 dispersed
Lsi04g01286 Lsi-Chr4:20294340 Lsi04g01900 Lsi-Chr4:26163193 2.35E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g282 . Blo03g01530 . Bda09g00486 . . . . . . . . Car01g01002 . . Cpe06g00714 Cpe02g00722 Bhi09g02001 . . . Hepe01g1358 Mch11g1108 . Cla11g01798 Cam11g1864 Cec11g1888 Cco11g1894 Clacu11g2027 Cmu11g1833 Cre11g2239 . Cone9ag0142 . . Lsi04g01286 . . . . . . . . . Bma07g01198 Bma14g00189 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004494 2 2 2 3 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 1 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25189 PF01593 Amino_oxidase 1.10E-89 CL0063 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01286 Lsi_Chr04 FPKM 3.028587 2.787235 3.72397 4.154352 4.635317 4.56234 5.016254 4.456498 3.531219 3.983896