Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01289 ATGGAGATCTGGGGGTTATTGGAAATGGTGAAAATGAAGTATGTTTCCATGTCTATGGTTTTGTCTGTTGTCTTGTTCATGTGTATTGGATCTTACGCCACTTTCACTCCCATTGATAACTATTTGATATCGTGTGGTTCTACACAAAACATCACCTTCCAAGGGAGAACTTTTGTTCCTGATTCTGGACATTCATTGCTCTCCAATGATGGTGAAAGCTTTGTTGTTAGTTCAAAAGGTACTACTGCTCCATCTCCAATCTATCAATCTGCTCGGGTTTTCACTAGCATTGCTTCGTATAAATTTGAAATCAAGAAAGAAGGTCGGCATTGGGTTCGGTTTTATTTCTATCCTATTCCAAAGTCGGAGCGAAATCTTGCATCTGCATCAATTACTGTTGTTACTGAGAAGTTTGTGCTGTTGAACAACTTCACTTTCAAGAACTACAATGGTTCTTTTATGTTCAAGGAGTATGCAATCAATGTCACGTCAGATTCCTTGACCCTTACTTTCATTCCATCCAATGGTTCCGTTTCGTTTGTTAATGCGATTGAAGTTGTCTCGGTGCCTGATGAGCTGATACCTGGCCAAGCATTGGCTTTGAATCCATCTGCTCCTTTTAGCGGCATCTCGGAACTTGCTTTTGAAACTGTTTACCGGCTGAATATGGGGGGTCCTTTACTTACTTCGCAGAATGATACACTTGGAAGGACTTGGGAGAATGATATGAAATACCTCCATGTCAACAGTTCTGCAGTGAATGTCTCTGCCAACCCGGGGAGCATAAAATATCATGCTGGTGTGACACCAGAAACTGCACCAAATTGGGTTTATGCGACAGCCGATGCCATGGGAGACCCAAATGTACCGAACGTGAACTTCAACTTGACTTGGGTTTTCTCTGTTGAACCAAATTTTCAATACTTTGTCAGAGTACACTTTTGTGATATAATGAGCAAGGTACTCAATAGTCTGGTTTTCAATCTTTACATCAATTCTGATAATGCTCTGGGAAGCTTTGATCTATCGTCATTAACCGGTGACTTGGGTGTGCCTTATTACAAAGATTTCATTTCCAACTCAGCAGATTCAACTACTTTGACCGTTAGTGTCGGTCCAGATACAATGGCAGATATCACCAATGCAACCATGAATGGGTTGGAGATTATGAGGATAAGCAACCAAGCTGGGAGCTTGGATGGAACGTCGTCTGTTGAAAGTCTTTTCCCAGATGCGCCTTCAAAGAAGAACAATATAGCCATCATTGTTGGTTGTGTGTTGGGAGCTGTAGTAGGCCTTGCTTTGCTCGTCTTGTGTTATTGCTGTTTTGTAGGACGCAAGTCAAAGACTACTCAACCAGCACACCCTTGGCTGCCTTTGCCCTTATATGGGAACTCTCAAACCATTACAAAAATGTCAACAACTTCTCAAAAGAGTGGAACTGCAAGCTTCATTTCTTTGGCTTCCTCCAGTCTCGGCAGATTCTTTACATTTCAGGAAATTCTTGATGCTACCAACAAATTTGACGAAAATCTGCTCCTTGGAGTTGGTGGTTTTGGTAGGGTTTACAAGGGAACACTTGAAGATGGTATGAAAGTTGCTGTTAAAAGAGGTAACCCCAGATCAGAACAAGGTCTTGCCGAATTTCGAACTGAAATAGAAATGTTATCAAAGCTACGACATCGTCACCTAGTGTCTCTTATTGGCTACTGTGATGAAAGATCAGAAATGATTCTTGTCTATGAGTATATGGCAAATGGACCTCTCAGGAGTCACTTGTATGGAACAGATCTACCACCGTTGTCGTGGAAGCAACGTCTTGATATTTGCATTGGTGCTGCGAGGGGGCTTCATTATCTTCACACTGGTGCAGCTCAAAGCATAATACACCGAGATGTTAAAACCACAAACATTCTCTTGGACGAGAATTTCGTTGCCAAAGTTGCAGACTTTGGTCTCTCAAAAACTGGGCCATCTCTGGATCAGACTCATGTAAGTACTGCTGTCAAGGGTAGTTTTGGTTACCTCGATCCTGAATACTTCAGGCGACAACAGCTCACTGAGAAGTCAGACGTATATTCATTCGGGGTCGTGCTAATGGAAGTTCTTTGCACGAGGCCAGCACTAAACCCTGTTCTGCCCCGAGAACAAGTCAACATAGCAGAATGGGCAATGACCTGGCAGAAGAAGGGTATGCTAGATCATATCATGGACCCAAATCTGGTAGGTAAAGTTAATCCAGCATCACTTAAGAAGTTTGGTGAAACAGCTGAGAAGTGTCTGGCCGAGTATGGGGTTGACAGGCCGTCTATGGGAGACGTCCTGTGGAACCTGGAATATGCTCTTCAGCTCGAGGAAACTTCATCTGCTCTAATGGAACCTGAAGACAACAGCACAAACCACATCCCTACCATCCAACTGACCCCACTTGAGCCATTTGATAATAGTGTAAGCATGATTGATGGAGGGAACTCTGGCACCGACGATGATGCAGAAGATGCTGCAACAAGTGCAGTATTTTCACAGCTCGTAAATCCTCGTGGGAGATGA 2550 43.18 MEIWGLLEMVKMKYVSMSMVLSVVLFMCIGSYATFTPIDNYLISCGSTQNITFQGRTFVPDSGHSLLSNDGESFVVSSKGTTAPSPIYQSARVFTSIASYKFEIKKEGRHWVRFYFYPIPKSERNLASASITVVTEKFVLLNNFTFKNYNGSFMFKEYAINVTSDSLTLTFIPSNGSVSFVNAIEVVSVPDELIPGQALALNPSAPFSGISELAFETVYRLNMGGPLLTSQNDTLGRTWENDMKYLHVNSSAVNVSANPGSIKYHAGVTPETAPNWVYATADAMGDPNVPNVNFNLTWVFSVEPNFQYFVRVHFCDIMSKVLNSLVFNLYINSDNALGSFDLSSLTGDLGVPYYKDFISNSADSTTLTVSVGPDTMADITNATMNGLEIMRISNQAGSLDGTSSVESLFPDAPSKKNNIAIIVGCVLGAVVGLALLVLCYCCFVGRKSKTTQPAHPWLPLPLYGNSQTITKMSTTSQKSGTASFISLASSSLGRFFTFQEILDATNKFDENLLLGVGGFGRVYKGTLEDGMKVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDHIMDPNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHIPTIQLTPLEPFDNSVSMIDGGNSGTDDDAEDAATSAVFSQLVNPRGR 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20305282 20308062 - Lsi04G012890.1 Lsi04g01289 661338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01289 849 Pfam Protein tyrosine and serine/threonine kinase 513 706 IPR001245 GO:0004672|GO:0006468
Lsi04g01289 849 ProSiteProfiles Protein kinase domain profile. 508 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01289 849 CDD STKc_IRAK 514 779 - -
Lsi04g01289 849 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 27 842 - -
Lsi04g01289 849 Gene3D - 213 393 - -
Lsi04g01289 849 Gene3D - 40 189 - -
Lsi04g01289 849 SUPERFAMILY Protein kinase-like (PK-like) 485 779 IPR011009 -
Lsi04g01289 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Lsi04g01289 849 PANTHER OS07G0166700 PROTEIN 27 842 IPR045272 GO:0004714|GO:0006468
Lsi04g01289 849 Pfam Malectin-like domain 43 391 IPR024788 -
Lsi04g01289 849 Gene3D Phosphorylase Kinase; domain 1 466 583 - -
Lsi04g01289 849 MobiDBLite consensus disorder prediction 813 834 - -
Lsi04g01289 849 SMART serkin_6 508 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01289 849 ProSitePatterns Protein kinases ATP-binding region signature. 514 536 IPR017441 GO:0005524
Lsi04g01289 849 Gene3D Transferase(Phosphotransferase) domain 1 584 801 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00074 Lsi-Chr1:739636 Lsi04g01289 Lsi-Chr4:20305282 0 dispersed
Lsi04g00839 Lsi-Chr4:8091470 Lsi04g01289 Lsi-Chr4:20305282 0 dispersed
Lsi04g01289 Lsi-Chr4:20305282 Lsi06g01446 Lsi-Chr6:25020241 0 dispersed
Lsi10g00175 Lsi-Chr10:2803452 Lsi04g01289 Lsi-Chr4:20305282 1.17E-123 dispersed
Lsi04g01289 Lsi-Chr4:20305282 Lsi10g01334 Lsi-Chr10:17550759 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83585 PF12819 Malectin_like 7.70E-38 CL0202 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01289 - - csv:101215627 1599.33