Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01295 ATGGGCGATCTGATGGCCGACGAGCAGATCTTCGTGAACGGTGACGAAAAAAGATTAACGATGGCCAATTTTCTAGCTCAGTTCCAGACGATCAAGAGTTCCTTCGACCGCCTCGTAATTGCTGTTGAAGACGTTAGTGACCTATGGCCAACTGTGAAGAATGGATTCGAGGAGAGATTACCATTCAAAAGAGCTTGTTTGAATAACAAGACACGTAATCCCGTCTTAGTTGACAAGTTGCCTGCTGAGTTCATATTGACTACCGATGCACGACTCCGAAGTAGGTTCCCTCAAGAGCAGTATTTATTTTGGTTTCGTGAACCATATGCAACTGTTGTTCTTGTCACCTGTGAGGATCTTGATGAGTTTAAGACTATTCTAAAACCTCGCTTGAAGCTAATTGTCCAAAATGATGAACGGGAGTGGTTTATTGTATATGTATCTAAAGCTCACCCAAATAACGATCAAGCCACCAAACAGGCAAAAAAAGTGTATAGCAAACTTGAAGTTGATTTTAGCTCGAAGAAGAGAGAAAGGTGCTGTAAATTAGACATACTTTGCCCTGAAGCAAATTTTTGGGAGGATCTGGAGTCTAAGATAATGGAGTCCATAAGAAATACCCTGGATAGACGTGTCCAGTTTTATGAAGATGAGATTCGCAAGCTAAGCGAACAACGCTTAATGCCAGTTTGGAACTTCTGCAATTTCTTTATTTTGAAGGAAAGCTTGGCATTTATGTTTGAGATGGCTCAGCTTCATGAAGATGCATTACGCGAGTATGATGAACTAGAGCTCTGCTATTTAGAAACAGTGAATATGACTGCAAAGCAGAGAGATTTTGGCGGAATTGACCATGGTGACGACCAAGCGACGTTGCTCAATCCTGGGAGCAAGCCCTTGACACAGATTGTTCAAGATGACTCATTCAGGGAATTTGAATTTAGACAATATCTTTTTGCCTGCCAATCAAAGAACATATTACCTTTCTGTATGCGTGAAGTCTGGGTAACAACTGCTTGCATGGCCTTAATCAATGCAATTGCTTCACATTTTAGTGAAGGCATTATGGCCCCAGATACAGAAAAGGAGTTTTTTCGCCTACAGGGTGATCTTTATTCGTTATGCAGAGTGAAGTTTATGAGGCTCGCAGAGTTAATTGGATATGGTTCATATATAGAGAGAAGTCCAGTCAACAGTGCTTGGCTGAGCATGCTACCTTGGCCCAAGCCGTCAGTTTGGCCCTCTGTTCCACCTGATGCTTCATCTGAAGTGTTAGCAAAGGAAAAAATTATTCTTCAAGAAACTCCACGAGTCAAGCACTTTGGTATTCAAAAGAAACAACTGCCTCTAGAACCTTCTTTGCTGTTGCGAGAAGCTAATCGCCGGAGGGCTTCCCTTTCTGTGGGAAATACGCTTGAAATGTTTGATGGGCGGCCAGCCTTTATTGATGGATCAGGTCCAGATATGTCACCAAAGATGTCCCCTAATAAAACACATGGGAGCTCCATGTCACGTACTTACTCTTCTCCAGGATTTGAAAACACAATCGATCGACCTATGAGACTTGCTGAGATTTATGTTGCTGCAGAACATGCTTTGAAGCAAACCATCTCTAGTTCTGATCTGTGGAAGTGCTTATCAGCTGTGGAGGAGTTTGAGGGTCAGGCGGGTTGTCCTGTGAGATTACTCGAGGTGCGCGAAGATTTGAGCTTGAAGAAACGCCATTGCTATGCCTTAGAGGAGCCATGGCTCTGGTACCATGGTGGCAGTCTACTGAACACAACTGAAAAATTACCAAGAACTTTGAGGGCTGGTTTTTTATCCTGGAGTGCTGCCTGTGCCAAAAATCAGAAGAAGCTCAGTCTGTGCTCTTCTATTGCTTCTACTAAAAAGTATCTGGAGCTAACTAAGGGTGCTGCGGAAAATTACCATCGATCCTGGTGGAAAAGACACGGGGTTGTTCTCGATGGTGAAATAGCTGCTGTCAGCTTTAGACATGGTAACTTCGATTTGGCTGCAAAGTCGTATGAGAAGGTTTGTGCCCTTTTTGCTGGTGAAGGATGGCAGGATCTATTGGCTGAAGTTCTTCCAAATTTGGCAGAATGTCAAAAGAAACTTAATGATGATGCTGGCTACCTCTCGTCTTGTGTGAGATTGTTATCATTAGATAAAGGCTTATTTTTGACAAAAGACCGCCAAGCTTTTCAATCAGAAGTAATACGTCTTGCACACAGTGAGATGAAGGACCCTGTACCCCTGGATGTTTCATCATTAATTACATTTTCTGGAAATCCTGGACCCCCTCTAGAATTGTGTGATGGTGATCCTGGCACTCTGTCTATTACTGTGTGGAGTGGCTTTCCTGATGATATAACTCTTGATTCACTGAGCCTTACTTTGATGGCCACGTACAATGCGGATGAAGGTGTTAAGCCAATAAGGAGCTCCACGGAAACTGTGCTAAACCCTGGTCGTAATATTATTACCCTTGCTTTGCCTCCTCAGAAACCAGGTTCTTATGTTTTAGGGGTTATTACTGGCCAGATTGGGAAGCTGAGATTCCGATCTCACAGTTTTTCCAAGGGTGACCCTGCTGACAGCGATGATTTTATGAGTTATGAGAAACCAACTAGACCTATCTTGAAGGTTTTCAAACCAAGACCATTAGTTGATCTTATTTCTGCCATTTCATCCCCTCTGCTCGTAAATGAGCCTCAGTGGGTTGGAATCATTGTTCGGCCCATCAATTACTCCCTTAAAGGAGCAATCTTGCATATCGATACTGGTCCTGGCTTGAAGATTGTAGAATCTCGTGAAATTGAGATGGAGACCTATGTCGACTTGTTGAAAAGTTCAATTGACATGGCGCACACCATTGATTCAAAGAACTTCGAACGGTTGTGCCTCAGTGATGGTAGAATAGAATTTCCAGATTGGGCAAGCAATGAGACTTCTATTTTGTGGATACCAATTCATGCTATCAATGAGAGGCTTGCAAGAGGATCAACCACAGTCACCTATCAGAGACTGAGTATTGTGGATGGGATGAGAACAATAGCACTGAAACTTGAATTTGGAGCTTTTCACAACCAGACGTTTGAGAAGACTCTGGCTGTGCATTTCACTGACCCTTTTCATGTGAGTACACGCATTGCTGATAAATGCAACGATGGCACTTTGCTTCTGCAGGTGATCATACATTCTGAAGTTAAGGCCACATTGACAGTATATGACGCCTGGCTTGATCTTCAAGAGGGGTTTGTTCATAATGGAAATGACAATGGAAGACCATCCTCTGGCTACTTCCCATTAGTTATTTCCCCATCTTCTAGAGCAGGAATTCTCTTCAGTATACGCTTGGGGAAAACAAATTATGAAGATGAAGGTGAAGTGACAAGTCCGGAAAGCATATTAAATATTAGATACGGGATCTCCGGGGATAGAGCGCTCGGGGCTCACCTGCCTGTTATTATAGATTCATCTGGAACTGAAGATGCTAAACAGGACTTGCTGTTCAAGAGCGCTCTAGTTTTGCAAAGGCCAGTGCTCGACCCTTGCCTGGCTGTTGGATTTCTTCCTCTTCCTTCCGAAGGCCTAAGAGTTGGACAGCTTATTACTATGAAATGGAGGATTGAAAGGCTAAATAATTTACAAGAGAACGAAGATTCCAAATGCAATCTCGATGATGTGTTATACGAAATTGATGCCAAGTCCGAAAATTGGATGATTGCCGGTAGGAAAAGAGGGCATGTTTCTCTCTCCCCTAGCCAAGGATCAAGAATGGTGATCTCAATACTATGCATGCCACTCGTGGCTGGTTATGTTCGTCCACCTAAACTTGGTTTGCCAAATATTGACGAGGCAAACATAAGTTGCAATCCTGCAGCTCCACACCTGGTTTGTGTTTTACCTCCGCCACTCAGCTCCTCATTCTGCATTCCAGCATGA 3948 43.26 MGDLMADEQIFVNGDEKRLTMANFLAQFQTIKSSFDRLVIAVEDVSDLWPTVKNGFEERLPFKRACLNNKTRNPVLVDKLPAEFILTTDARLRSRFPQEQYLFWFREPYATVVLVTCEDLDEFKTILKPRLKLIVQNDEREWFIVYVSKAHPNNDQATKQAKKVYSKLEVDFSSKKRERCCKLDILCPEANFWEDLESKIMESIRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFFILKESLAFMFEMAQLHEDALREYDELELCYLETVNMTAKQRDFGGIDHGDDQATLLNPGSKPLTQIVQDDSFREFEFRQYLFACQSKNILPFCMREVWVTTACMALINAIASHFSEGIMAPDTEKEFFRLQGDLYSLCRVKFMRLAELIGYGSYIERSPVNSAWLSMLPWPKPSVWPSVPPDASSEVLAKEKIILQETPRVKHFGIQKKQLPLEPSLLLREANRRRASLSVGNTLEMFDGRPAFIDGSGPDMSPKMSPNKTHGSSMSRTYSSPGFENTIDRPMRLAEIYVAAEHALKQTISSSDLWKCLSAVEEFEGQAGCPVRLLEVREDLSLKKRHCYALEEPWLWYHGGSLLNTTEKLPRTLRAGFLSWSAACAKNQKKLSLCSSIASTKKYLELTKGAAENYHRSWWKRHGVVLDGEIAAVSFRHGNFDLAAKSYEKVCALFAGEGWQDLLAEVLPNLAECQKKLNDDAGYLSSCVRLLSLDKGLFLTKDRQAFQSEVIRLAHSEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSITVWSGFPDDITLDSLSLTLMATYNADEGVKPIRSSTETVLNPGRNIITLALPPQKPGSYVLGVITGQIGKLRFRSHSFSKGDPADSDDFMSYEKPTRPILKVFKPRPLVDLISAISSPLLVNEPQWVGIIVRPINYSLKGAILHIDTGPGLKIVESREIEMETYVDLLKSSIDMAHTIDSKNFERLCLSDGRIEFPDWASNETSILWIPIHAINERLARGSTTVTYQRLSIVDGMRTIALKLEFGAFHNQTFEKTLAVHFTDPFHVSTRIADKCNDGTLLLQVIIHSEVKATLTVYDAWLDLQEGFVHNGNDNGRPSSGYFPLVISPSSRAGILFSIRLGKTNYEDEGEVTSPESILNIRYGISGDRALGAHLPVIIDSSGTEDAKQDLLFKSALVLQRPVLDPCLAVGFLPLPSEGLRVGQLITMKWRIERLNNLQENEDSKCNLDDVLYEIDAKSENWMIAGRKRGHVSLSPSQGSRMVISILCMPLVAGYVRPPKLGLPNIDEANISCNPAAPHLVCVLPPPLSSSFCIPA 1315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20442275 20458531 - Lsi04G012950.1 Lsi04g01295 661344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01295 1315 MobiDBLite consensus disorder prediction 491 510 - -
Lsi04g01295 1315 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 325 555 IPR045126 GO:0048193|GO:1990071
Lsi04g01295 1315 MobiDBLite consensus disorder prediction 484 510 - -
Lsi04g01295 1315 PANTHER BNAC09G30770D PROTEIN 21 325 - -
Lsi04g01295 1315 PANTHER BNAC09G30770D PROTEIN 325 555 - -
Lsi04g01295 1315 PANTHER BNAC09G30770D PROTEIN 622 1314 - -
Lsi04g01295 1315 Coils Coil 205 225 - -
Lsi04g01295 1315 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 622 1314 IPR045126 GO:0048193|GO:1990071
Lsi04g01295 1315 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 21 325 IPR045126 GO:0048193|GO:1990071
Lsi04g01295 1315 Pfam Trafficking protein particle complex subunit 10, TRAPPC10 1196 1281 IPR022233 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01295 K20307 TRAPPC10, TRS130; trafficking protein particle complex subunit 10 - csv:101216596 2232.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g275 . Blo03g01533 . Bda09g00489 . Bpe08g01039 . . . . Cma01g01192 . Car01g01016 . Sed07g2626 . Cpe02g00717 Bhi09g02013 Tan01g4437 Cmetu04g1644 . Hepe01g1363 Mch11g1102 . Cla11g01790 Cam11g1854 Cec11g1879 Cco11g1885 Clacu11g2016 Cmu11g1826 Cre11g2232 Cone6ag0122 Cone9ag0146 . . Lsi04g01295 . . . . . . . . . Bma07g01193 . . Cmo01g01245 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010925 1 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 2 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01295 Lsi_Chr04 FPKM 0.587281 0.57646 0.744907 0.389229 2.385813 3.033963 3.158634 0.815089 1.000109 0.792961