Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01303 ATGGGAGGCTATAATGAAGATGGGAAGGGAATGAGTAATTGGGATGTTTTTTCCCATATTCCAGGAAAAGTTAAGAACAACGACACCGGAGATGTCGCCAACGATCACTACCACCGGTTTCTGGAAGATATTGAGTTAATGCATTCCATTGGGATGAATGCTTATCGCTTTTCCATTTCTTGGTCTCGAATTTTGCCAAGTATAGAGCCGTTCGTGACAATTCACCATTTTGACCTTCCAATTGAACTTGAGCAAAGATATAAAAGTTGGATGAGCTCTCAAATGCAAGTGAAGTATTGGATAACAATAAATGAGATAAATCAAGTAGCAAAAGCGTCCTACTTAAGTGGAATTTCTCCACCGGGCCACTGCTCGCCACCTTTTGGAAAATGCTTAACCGGTAACTCTGATATTGAGCCTCTCGTTGCTGTGCACAACATGTTACTTGCCCATGCTAAGGCCGTTTACCTTTACCGCATCCATTTCCAAGAAAAACAAGGTGGATCCATAGGAATAGCAGCAGGTGGAAACATGTATGAACCATTAGCAGACAACGAATTTGACAAAGAGGCTGCTGACAGAGGCTTGCTTTTCGACTTTGCCTGGTTTAAGATTAACACCAAGGTCGATCCTACTCAAAGGAAGACCGACCCAATTCAAAGGAATGTTGAGGCCAATCCTACTCAAAGAAATGTCAAGGCTAACCTTCTAAAGAAAGAGAGAGAGAAAAAGAGGGGAATTGGAGATAATGGAGAATCAAACTTGCTTTCTTTAACAAGTCCCTTTCAAAGATGTCATATCAACATCGGGTCGAGACCGACCATCCATGGAATGACACGTGGTTATTGTCCATCAGAGGATGATGATAACAAAGTTGAGGACATTTTAAATGACACAAAACGGGTCAATTACCACCAGAATTACCTTGCTTCCTTGGCTAAAGCAATGAGGAATGGTGGTGATGTGAGAGGGTATTTTGTTTGGTCCTTAATGGATAACTTTGAGTGGGCCAATGGGTACACCACAAAATATGGGCTTTTATATGTGGACCGACAAACACTTAAGCGTCGGCCCAAACTTTCGGCCCAATGGTTTGCTTCTTTGCTCGGCGGCAACCTACAACAACTTGCTAAATCTTCATCCTTCCTAAATACAAATGCCTCTCATTCCCTCATGGATGCTTAA 1185 42.28 MGGYNEDGKGMSNWDVFSHIPGKVKNNDTGDVANDHYHRFLEDIELMHSIGMNAYRFSISWSRILPSIEPFVTIHHFDLPIELEQRYKSWMSSQMQVKYWITINEINQVAKASYLSGISPPGHCSPPFGKCLTGNSDIEPLVAVHNMLLAHAKAVYLYRIHFQEKQGGSIGIAAGGNMYEPLADNEFDKEAADRGLLFDFAWFKINTKVDPTQRKTDPIQRNVEANPTQRNVKANLLKKEREKKRGIGDNGESNLLSLTSPFQRCHINIGSRPTIHGMTRGYCPSEDDDNKVEDILNDTKRVNYHQNYLASLAKAMRNGGDVRGYFVWSLMDNFEWANGYTTKYGLLYVDRQTLKRRPKLSAQWFASLLGGNLQQLAKSSSFLNTNASHSLMDA 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20702644 20719960 + Lsi04G013030.1 Lsi04g01303 661352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01303 394 PANTHER BETA-GLUCOSIDASE 18-LIKE 279 375 - -
Lsi04g01303 394 Pfam Glycosyl hydrolase family 1 67 204 IPR001360 GO:0004553|GO:0005975
Lsi04g01303 394 Pfam Glycosyl hydrolase family 1 288 369 IPR001360 GO:0004553|GO:0005975
Lsi04g01303 394 Pfam Glycosyl hydrolase family 1 2 66 IPR001360 GO:0004553|GO:0005975
Lsi04g01303 394 PANTHER GLYCOSYL HYDROLASE 7 203 IPR001360 GO:0004553|GO:0005975
Lsi04g01303 394 PRINTS Glycosyl hydrolase family 1 signature 343 355 IPR001360 GO:0004553|GO:0005975
Lsi04g01303 394 PRINTS Glycosyl hydrolase family 1 signature 298 309 IPR001360 GO:0004553|GO:0005975
Lsi04g01303 394 PRINTS Glycosyl hydrolase family 1 signature 319 336 IPR001360 GO:0004553|GO:0005975
Lsi04g01303 394 PANTHER GLYCOSYL HYDROLASE 279 375 IPR001360 GO:0004553|GO:0005975
Lsi04g01303 394 Gene3D Glycosidases 267 386 - -
Lsi04g01303 394 PANTHER BETA-GLUCOSIDASE 18-LIKE 7 203 - -
Lsi04g01303 394 SUPERFAMILY (Trans)glycosidases 2 372 IPR017853 -
Lsi04g01303 394 Gene3D Glycosidases 1 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01303 K05350 bglB; beta-glucosidase [EC:3.2.1.21] - csv:101220587 437.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01303 Lsi-Chr4:20702644 Lsi02g00618 Lsi-Chr2:5461431 1.12E-94 dispersed
Lsi04g01307 Lsi-Chr4:20757435 Lsi04g01303 Lsi-Chr4:20702644 4.54E-46 dispersed
Lsi04g01315 Lsi-Chr4:20915966 Lsi04g01303 Lsi-Chr4:20702644 1.39E-32 dispersed
Lsi04g01303 Lsi-Chr4:20702644 Lsi04g01304 Lsi-Chr4:20739151 3.26E-132 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g267 . . . . . . . . . . . . . . Sed04g3164 . . Bhi09g02021 Tan01g4428 Cmetu04g2674 . . Mch11g1092 . . . . . . . . . . . . Lsi04g01303 Csa04g02366 Chy07g00095 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000954 1 8 1 1 1 0 1 3 0 4 2 4 1 4 4 0 0 1 1 3 3 4 1 2 1 9 2 1 2 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01303 Lsi_Chr04 FPKM 86.906136 89.792839 146.952667 141.7901 19.300467 24.01132 18.896946 82.691093 84.414917 76.193855