Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01316 ATGGATCCTCGTACCCGTCTGGATCATGCTCTGTTTCAGCTCACTCCCACCAGAACCAGATGTGAACTGGTTATCTCTTCCACTGGAGGCGCTACAGAGAAACTCGCATCTGGGCTTCTTCAGCCATTTATCACCCACCTCAAATGTGCTAAAGATCAGATTTCTAAAGGGGGTTACTCCATTACTCTTCGCCCAGTTGCAGGATCAAATGCTTCTTGGTTCACTAAGGGCACTCTTCAGAGATTTGTGAGATTTGTTAGCACGCCAGAGGTTCTTGAGAGATTTGTTACTACAGAGAAGGAGATTGTACAGATCGAGAATTCTATGTCCACAGATGCAGATGGAAACACGACGGCTGCTGATTGGAATTCGAAAAGATCTAGCCCCACCATGAGGGTTAAGGGTGATTCCGATGAATATAATGATGATGCTGCACCGAAGGAGAATCCCAAGATCCGCCTTCAACGTGTTCTAGAGACTCGAAAGGCGGTGCTCCACAAAGACCAAGCGATGGCTTATGCCCGTGCTTTAGTTGCAGGATATGAGCTGGATCATATTGATGATCTTATATCTTTTGCCGATGCTTTTGGAGCTTCACGTTTGAGGGAAGCATGTGTAAACTTTGTGGACTTATGCAAGCGAAAGAATGAAGATAAGCTCTGGATAGACGAAATAGCAGCTATGCAGGCATTCTCTCAGCCAGCATTTCCTTACTCAGAAACTTCTGGTATCATACTAGCCGGTGAAGACAACGAAACTAACGGCAATGCTCAAACATCAAGATCTGATTCGACTGCAAGTCAAGGAAGTTTGGATAACAATCAAGATGGTAGCGTTCCAAAGTCGGGACAAATTCCATTGTCAAATGGGAAAGCTCAAGTGCCAATGACATGGCCCAATCATCTTCCTCAGTATATGCACAACTTTCAAGGTCCTTTATATCCTCCATATCAAGGATATATTTTGCCCGGAATGCAGATGCCACCACCATATTACCCAGGGAGTATGCAATGGCAATCAAATGCTGAAGACTTGAGTATTGCTTCTGATCGAGAACCCAATGGTCGTAGGAGTTCTAAATCTCATAGGAACAAGAAGAAACTTTCACATAAGGAGGTTCACAGAACTTCAGAACAAGAAGGAACTACAGGGTCCAGTGAATCCAGCGTTGACAGTGAATCAGATGAACACTCTGATGACGACAAAAAGCAATATTCAACAGAAAAGATACATAAGAAAAGGCATGGAAAGAAATCCTCAAGAACAGTTGTTATACGAAATATCAATTACATAACCTCAAAGAGGAATGGTGAAAAGGGCAGCCACTCAGAGGATGGTTCATCGGACGAGGGTGAATTTATTGATGGGGATTCCATCAAACAGCAGGTAGAGGAAGCGGTTGGGACATTGGAGAGAAGACATAAATCAACCAGTCGACACCAAAAGAAACAGAATGGCAACGGCAATGGTGATGGCTTAAACGATTCTGAAGGACAGGAGACTAACCGGGTATCAAACAATTCAGAGGGAGACAAGACCAGTAGCCCATGGGATGCTTTCCAGAGTCTTCTTATGAGTGAAAAGGAGCCAGATAACTCCAGTGAACTGCCCTCAGTTCAGAATGAAGAAGGCCATTTTACAATCAAACCTGAGGGAAGGACGCCTATGCTAAACTTGGAATCAGAGAAAGCACCGAGACAGCGTGGAGTTTCAGGCGATTCTTTCCTCGTGACAGACAGGAATTCAGGTAACGAAGGGAGAACACATATTGAAACTTTTGAAGCTGGTGATATTGCCAACCCAATTAATAGGAGAGAAAGCACATACGAAGAGTTATTATTTTCACAAAGAGGTGGAGAATCAGGGAACAATGCGCATTCCACTGTGTCCGATTTTACCGTGTCTTCTAGGATGAAAAATCAAAGAGAAGGTGATTGGTTTGTCAGCAATCCAGCTGATAAATCTGAAAATCAGTATCACAACGTTGGTCCCAGAGTTTACGACACCGACTTCTCTTCATCAGCTCAAGACCATTTCTATGCAGAGAAAAACAAGAAAGATGTTTTGGCGGACGACTCTTTCATGATTCAGTCTCGACCATTAGTAGATGACCAATCTGACTTTCAATCTAGACGAGACATAAGCATGGTGTCAGACATTGTTGGGGATGCTGAAAATGAGTATGTCAAACAAGAATTTTCAAGAGATGATAAGCCTGCAACTTTTGGTGTCAGTGAACCAGATGACCTTTACATGATGCTTGATCGGGATATAGCTGCAGAGCATACAGTAGCATCTTGGACCCCAGAAATGGACTATGAAAATAATTTTTCGACCATAGCCAATAGTAAGCACAATGATATTGAAGCCAATGATGGTGATGATAATGGGTCGCCTGGTTTGGAGAAGAGCAGTAAAAATAAAGAATCTGGGGGCAAAGTTCCAAGTAAAGAAGCAAGATCCAAAGCTTTGGGAGGATCTCTTGTTAAGGGAAAATATGATGTTCAATCAAGAACAAGAAAACCACTTTCTGGAAGCAGAACTGCAGTTCCTAAGAGCAAATTTGAGAAGGAAGAAGAGACTAGAAGGAGAATGGAAGAATTGGCGATTGAACGCCAGAAAAGAATTGCTGAAAGGAGTGCTTCTAGTAAATTTGGTACTGTGAGTTCAAAGCCTGGTGTACCTAAGATTGAGAAGCCAAAAAGCCAATCCCAGGTTCAAGAAGCCAAGAAGTCACCTAAGCCTGTACTTAGGAGTTCAACCATAGATCGCCTTGCAACTGCTCGTACACCTCAGAAAGTATCTGCAACTCAATCACCATCACGTCAACCAAATAAGCCAATCTCAAGAGCAAATGGCGTTAGCACTCCTACCTCATCAGAAAAGCTCTCTAAAACTGACAGTAAGAACCTTATCTCGAACAAAGTAAAACCTTCCAATTTAAAAAACGGGCACAAGAAATTGAGTAAGGCACTTTCTTCTGATTCTTATGGCCAGACAACAATGGATGGCAAGGAAGACGTAGCAGCATTACCAGCTGAGTCGGAAATACTGAATGCAACTCAACCAATCGACAACGTCGATGATGAGATGGAAGATATTAAGGAGGTACACACTACCCATTCAGTCGAGAAAAATGAAGAAACTTTTATTACTCAAGGAGATGGATTAGTTGATGGAAGTGGTAATGGTAATTCAAACGACAAGGTTTTGTCTGTCCCAATTGAAGATAAACTTGAACAAAACCAGTTTAAAGGTGGTGGTGGTGATGATGATGATTTGTCTAAAGCACATTTAGTTCTTAGCAAAGATACAAACATTTCTTATGGTCACAATGAACTTACTCCTGAAAAGATAGTTGATTTTGTGGTTTTGTCCGATAAAGCCTTAGGCCCTTCAGCCTTGAATGCTGGAGAAAATGGGGTAGCTGATCATATTGTAGCCTCACCCGAAATTTCTGAGATCGAAATCTCGACTCCTCCCCCCTCGAGTAACGAGATGATCTCGGAGTATACAACACACTCCAGGAAGAAATGGATGAGTGATGAAAACTCTCCCAAAGCACCTAAAGGGTTTAGAAAGCTGCTCTTTTTCGGACGTAAAACCCGAAACACTTCCACAGATTGA 3627 42.57 MDPRTRLDHALFQLTPTRTRCELVISSTGGATEKLASGLLQPFITHLKCAKDQISKGGYSITLRPVAGSNASWFTKGTLQRFVRFVSTPEVLERFVTTEKEIVQIENSMSTDADGNTTAADWNSKRSSPTMRVKGDSDEYNDDAAPKENPKIRLQRVLETRKAVLHKDQAMAYARALVAGYELDHIDDLISFADAFGASRLREACVNFVDLCKRKNEDKLWIDEIAAMQAFSQPAFPYSETSGIILAGEDNETNGNAQTSRSDSTASQGSLDNNQDGSVPKSGQIPLSNGKAQVPMTWPNHLPQYMHNFQGPLYPPYQGYILPGMQMPPPYYPGSMQWQSNAEDLSIASDREPNGRRSSKSHRNKKKLSHKEVHRTSEQEGTTGSSESSVDSESDEHSDDDKKQYSTEKIHKKRHGKKSSRTVVIRNINYITSKRNGEKGSHSEDGSSDEGEFIDGDSIKQQVEEAVGTLERRHKSTSRHQKKQNGNGNGDGLNDSEGQETNRVSNNSEGDKTSSPWDAFQSLLMSEKEPDNSSELPSVQNEEGHFTIKPEGRTPMLNLESEKAPRQRGVSGDSFLVTDRNSGNEGRTHIETFEAGDIANPINRRESTYEELLFSQRGGESGNNAHSTVSDFTVSSRMKNQREGDWFVSNPADKSENQYHNVGPRVYDTDFSSSAQDHFYAEKNKKDVLADDSFMIQSRPLVDDQSDFQSRRDISMVSDIVGDAENEYVKQEFSRDDKPATFGVSEPDDLYMMLDRDIAAEHTVASWTPEMDYENNFSTIANSKHNDIEANDGDDNGSPGLEKSSKNKESGGKVPSKEARSKALGGSLVKGKYDVQSRTRKPLSGSRTAVPKSKFEKEEETRRRMEELAIERQKRIAERSASSKFGTVSSKPGVPKIEKPKSQSQVQEAKKSPKPVLRSSTIDRLATARTPQKVSATQSPSRQPNKPISRANGVSTPTSSEKLSKTDSKNLISNKVKPSNLKNGHKKLSKALSSDSYGQTTMDGKEDVAALPAESEILNATQPIDNVDDEMEDIKEVHTTHSVEKNEETFITQGDGLVDGSGNGNSNDKVLSVPIEDKLEQNQFKGGGGDDDDLSKAHLVLSKDTNISYGHNELTPEKIVDFVVLSDKALGPSALNAGENGVADHIVASPEISEIEISTPPPSSNEMISEYTTHSRKKWMSDENSPKAPKGFRKLLFFGRKTRNTSTD 1208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20924820 20931587 + Lsi04G013160.1 Lsi04g01316 661365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01316 1208 MobiDBLite consensus disorder prediction 249 292 - -
Lsi04g01316 1208 MobiDBLite consensus disorder prediction 1031 1045 - -
Lsi04g01316 1208 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 1201 - -
Lsi04g01316 1208 MobiDBLite consensus disorder prediction 851 879 - -
Lsi04g01316 1208 MobiDBLite consensus disorder prediction 923 979 - -
Lsi04g01316 1208 PANTHER COP1-INTERACTING PROTEIN 7 1 1201 - -
Lsi04g01316 1208 MobiDBLite consensus disorder prediction 112 146 - -
Lsi04g01316 1208 MobiDBLite consensus disorder prediction 422 436 - -
Lsi04g01316 1208 MobiDBLite consensus disorder prediction 482 541 - -
Lsi04g01316 1208 MobiDBLite consensus disorder prediction 1056 1070 - -
Lsi04g01316 1208 MobiDBLite consensus disorder prediction 390 407 - -
Lsi04g01316 1208 MobiDBLite consensus disorder prediction 784 1095 - -
Lsi04g01316 1208 MobiDBLite consensus disorder prediction 349 587 - -
Lsi04g01316 1208 MobiDBLite consensus disorder prediction 986 1001 - -
Lsi04g01316 1208 MobiDBLite consensus disorder prediction 799 816 - -
Lsi04g01316 1208 MobiDBLite consensus disorder prediction 112 130 - -
Lsi04g01316 1208 MobiDBLite consensus disorder prediction 131 146 - -
Lsi04g01316 1208 MobiDBLite consensus disorder prediction 437 459 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01316 - - - mcha:111010382 1831.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02877 Lsi-Chr2:34978298 Lsi04g01316 Lsi-Chr4:20924820 8.21E-28 dispersed
Lsi04g01316 Lsi-Chr4:20924820 Lsi09g01224 Lsi-Chr9:19656598 2.15E-42 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g263 . . . . . . . . . . . . . . . . . Bhi09g03392 Tan01g4425 . . . . . . . . . . . . . . . . Lsi04g01316 . . . . . . . . . . . . . Cmo09g00872 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003665 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 0 2 2 1 1 2 1 1 1 1 1 4 3 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01316 Lsi_Chr04 FPKM 3.246787 4.240123 6.167233 5.904555 9.401331 8.068514 8.9282 7.847504 7.231404 7.700235