Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01318 ATGATGAACAAATCCGTGGACGAAGACGACGAAGAAGAGTGTTTCTACGAGTCTCTTGATCGCATTGCCTCCTCAGGTTCATGTTCCACTTCCAATTCCGATGATGATAGAGATTCAAACGCCAACTCCCCTAATTATGATTCTGTGCACCCTTTTCCCATACCCAAATTCCCCATGGCTGTTTCCAACTATGATATTTGGATCTCCGAGCCGGCTTCTGTGTTGGAGCGCCGTAGCCGTCTTCTTCGAGAAATGGGTCTTAGCGGCGACCCTTCTCTTTCACGGGCTAATACGGCCTTGGAATTGGATCATAGAGAAAAGGGTGTTGCCGATTTTGGTCGATCGGTGTCGTCCGATTATTTGACTAGTCAACAACAGCAGCAGCCCCCTGCAATCATCCGCTCGAAATCGGATGGTGCTGCAGATTGTAACAGGAACGCAAGCCCTTCACACCCTTCCGGCAGCGATACTAATAACCAGTGTAATTATTCGTCGTCCATTAATTCTCCTTCAATTCTTTCATTTCATTCGGTCAATGAGACCGCCACTTCATTTGCAAATAACCGTAATCGTGTAGTTGTTAAGTCCCGAAGCTGTAAGAGTGATGGAGCTCCATCGGTTTCTTTCGCTACTTCACAGCATAAGCCGCCTTCTGGGAAAAATTGTAGATGGGCGGATGAGATTCGAAGTGATTCCTTGGTTGTGAATGCCAATTCGGATCCTGATCCATCGTCGATGTCCCAGAATGGTGTGAATAGACGAGAGGTTAGCGAGGATTCGGCTTGTTCTACTAGTGGAAAGGTCAATGAGAAAGCCTGCACTATCAAAGATCTTGACAATGGGAAAGAGTTTGTTGTGAACGAGATTACTGAAGATGGTATGTGGAACAAGCTCAAGGAAGTAGGGACTGGGAGACAGTTGACCATGGAGGAGTTTGAGATGTGTGTTGGGCATTCACCTATTGTTCAAGAACTGATGCGGCGCCAGAATGTGGAGGATGGTTGTAACGAAAATGTCGATTTAAATGTGAATGGGGATATCGGTAGCAGTTCGAAATTGAAAAAGAAAGGAGGCTGGTTTAAGAGTATAAAGAGTGTTGCTAGCACGGTGAAGGGTCAAAAGGAGAGACGTAGTAGTGATGAGAGGGATACTTCATCTGAGAAGGGTGGACGAAGGTCAAGCTCTGCAACAGATGATAGCCAAGATGTTTCCTTTCATGGACCAGAGAGAGTAAGAGTTCGGCAGTATGGAAAATCAAGTAAAGAGTTGTCTGCACTCTACAAGAGCCAAGAGATACAGGCCCACAGTGGGTCAATATGGACCATTAAGTTTAGTTTGGATGGGAAGTACCTTGCAAGTGCAGGAGAGGACCGTATCATTCATGTTTGGCAGGTCGTTGAGTCGGAAAAAAAGGGTGATCTACTGATGGAGAAACCTGAAGAAGGGAATTTGAGTTTCTTATTTGCAGCTAATGAGTCACCAGAGCCCACTTCATTATCTCCAAATGTGGATAGCCATCATGAGAAGAAGAGAAGAGGGAGGTCCTCTATTAGCCGGAAGTCAGTGAGCTTGGAACATGTGATAGTGCCGGACACTGTATTTGGGCTTTCAGAAAAACCTATCTGTTCATTCCAGGGGCATCTTGATGTTGTGCTTGACCTATCTTGGTCCAAATCTCAGCATTTGCTCTCGTCTTCAATGGATAAAACTGTGCGGCTCTGGCACTTGTCAAGCAAATCCTGCTTGAAAATCTTTTCGCACAGTGATTATGTTACTTGCATCCAGTTTAATCCTATTGACGATAGATACTTCATTAGTGGATCATTAGATGCGAAAGTTCGTATATGGAGTATCCCAGATCGTCAAGTTGTTGATTGGAGCGACTTGCATGAGATGGTGACCGCTGCTTGCTATACACCTGATGGCAAGGGTGCATTGGTTGGTTCTTACAAGGGAAGCTGCCGATTGTACAGTACTTCTGTCAGACTGATTGATAATATTTCTTTCAATTTTTTCCCAGAGAACAAGATGCAGCAAAAAAGTGAGATAAACCTGCAGAACAAGAAGAAAAAATCTAGTCACAAGAAAATAACTGGGTTCCAGTTTGCTCCAGGAAGTTCTTCAGAAGTGCTCATTACATCTGCAGATTCACGCATCCGAGTGGTTGATGGTGTCGATCTGGTCCAGAGGTTTAAAGGGTTCCGAAATACAAACAGCCAAATCTCTGCCTGCCTTTCGGCGAATGGCAGGTACGTGATATCAGCCAGTGAAGATTCTCATGTGTACATATGGAAGCATGAAGCTGACTCTCGACCTAGTAGGAGCAAAGGAGTGACAGTTGTTCGATCATACGAGCATTTTCACTGTCAGGATGTCTCTGTGGCTATTCCATGGCCTGGTATGGGTGATACATGGGGACTTGACGACGATTATTGTGGAGATGACAATGTGATTGAAAATCATTTCGACGAAGTCTCCTCCGCTAACCATCCCCCTTCACCTGTGGAGGCAGAAAACGGCAGTGAGGATTCACTATTGGCATCTGGTTGCACCAACAGCCCTCTTCATGGAACTCTTTCTAGTGCAACCAACAGCTACTTCTTTGACAGAATCTCAGCAACATGGCCAGAGGAAAAGCTCGTTCTGAACACTCGGAACAACCGTAGCCCTCATTCCAGTGTGGACATTGCCAGCGGAATGTTCCAAGGCTCATCGGCATGGGGTATGGTGATCGTAACGGCAGGTCTTCGAGGCGAAATCAGAACTTTCCAAAATTTTGGATATCCAGTTAAGATTTAA 2799 45.41 MMNKSVDEDDEEECFYESLDRIASSGSCSTSNSDDDRDSNANSPNYDSVHPFPIPKFPMAVSNYDIWISEPASVLERRSRLLREMGLSGDPSLSRANTALELDHREKGVADFGRSVSSDYLTSQQQQQPPAIIRSKSDGAADCNRNASPSHPSGSDTNNQCNYSSSINSPSILSFHSVNETATSFANNRNRVVVKSRSCKSDGAPSVSFATSQHKPPSGKNCRWADEIRSDSLVVNANSDPDPSSMSQNGVNRREVSEDSACSTSGKVNEKACTIKDLDNGKEFVVNEITEDGMWNKLKEVGTGRQLTMEEFEMCVGHSPIVQELMRRQNVEDGCNENVDLNVNGDIGSSSKLKKKGGWFKSIKSVASTVKGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGKSSKELSALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRIIHVWQVVESEKKGDLLMEKPEEGNLSFLFAANESPEPTSLSPNVDSHHEKKRRGRSSISRKSVSLEHVIVPDTVFGLSEKPICSFQGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPIDDRYFISGSLDAKVRIWSIPDRQVVDWSDLHEMVTAACYTPDGKGALVGSYKGSCRLYSTSVRLIDNISFNFFPENKMQQKSEINLQNKKKKSSHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVQRFKGFRNTNSQISACLSANGRYVISASEDSHVYIWKHEADSRPSRSKGVTVVRSYEHFHCQDVSVAIPWPGMGDTWGLDDDYCGDDNVIENHFDEVSSANHPPSPVEAENGSEDSLLASGCTNSPLHGTLSSATNSYFFDRISATWPEEKLVLNTRNNRSPHSSVDIASGMFQGSSAWGMVIVTAGLRGEIRTFQNFGYPVKI 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20966338 20976954 + Lsi04G013180.1 Lsi04g01318 661367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01318 932 SMART WD40_4 425 464 IPR001680 GO:0005515
Lsi04g01318 932 SMART WD40_4 537 575 IPR001680 GO:0005515
Lsi04g01318 932 SMART WD40_4 724 765 IPR001680 GO:0005515
Lsi04g01318 932 SMART WD40_4 578 617 IPR001680 GO:0005515
Lsi04g01318 932 SMART WD40_4 620 658 IPR001680 GO:0005515
Lsi04g01318 932 SMART WD40_4 684 723 IPR001680 GO:0005515
Lsi04g01318 932 MobiDBLite consensus disorder prediction 493 518 - -
Lsi04g01318 932 Pfam WD domain, G-beta repeat 739 765 IPR001680 GO:0005515
Lsi04g01318 932 Pfam WD domain, G-beta repeat 580 617 IPR001680 GO:0005515
Lsi04g01318 932 Pfam WD domain, G-beta repeat 431 463 IPR001680 GO:0005515
Lsi04g01318 932 Pfam WD domain, G-beta repeat 539 574 IPR001680 GO:0005515
Lsi04g01318 932 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 578 - -
Lsi04g01318 932 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 584 618 - -
Lsi04g01318 932 SUPERFAMILY WD40 repeat-like 428 767 IPR036322 GO:0005515
Lsi04g01318 932 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 584 IPR001680 GO:0005515
Lsi04g01318 932 PRINTS G protein beta WD-40 repeat signature 562 576 IPR020472 -
Lsi04g01318 932 PRINTS G protein beta WD-40 repeat signature 604 618 IPR020472 -
Lsi04g01318 932 PRINTS G protein beta WD-40 repeat signature 451 465 IPR020472 -
Lsi04g01318 932 ProSiteProfiles Trp-Asp (WD) repeats profile. 432 465 IPR001680 GO:0005515
Lsi04g01318 932 MobiDBLite consensus disorder prediction 370 416 - -
Lsi04g01318 932 MobiDBLite consensus disorder prediction 22 47 - -
Lsi04g01318 932 ProSiteProfiles Trp-Asp (WD) repeats profile. 584 618 IPR001680 GO:0005515
Lsi04g01318 932 MobiDBLite consensus disorder prediction 235 263 - -
Lsi04g01318 932 Gene3D - 417 790 IPR015943 GO:0005515
Lsi04g01318 932 MobiDBLite consensus disorder prediction 201 218 - -
Lsi04g01318 932 MobiDBLite consensus disorder prediction 22 50 - -
Lsi04g01318 932 MobiDBLite consensus disorder prediction 117 162 - -
Lsi04g01318 932 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 432 465 - -
Lsi04g01318 932 PANTHER WD REPEAT DOMAIN 44 7 932 IPR040324 -
Lsi04g01318 932 MobiDBLite consensus disorder prediction 197 221 - -
Lsi04g01318 932 MobiDBLite consensus disorder prediction 141 162 - -
Lsi04g01318 932 MobiDBLite consensus disorder prediction 370 395 - -
Lsi04g01318 932 MobiDBLite consensus disorder prediction 117 133 - -
Lsi04g01318 932 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 7 932 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01318 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101208316 1714.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01422 Lsi-Chr1:12357615 Lsi04g01318 Lsi-Chr4:20966338 5.45E-147 dispersed
Lsi04g01318 Lsi-Chr4:20966338 Lsi09g00152 Lsi-Chr9:1590257 2.16E-122 dispersed
Lsi04g01318 Lsi-Chr4:20966338 Lsi02g02285 Lsi-Chr2:29422484 2.57E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01318 Lsi_Chr04 FPKM 22.553694 17.780451 6.850289 4.355707 11.537628 14.178908 10.805477 7.029557 11.753839 8.21032