Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01320 ATGGCCGATCGTTTCTTTCCAAACCAAATGCCACGCTTCCTCGCCGAAGCACCGGCGGACGAACTCGCAGCGTCCGATTCCGATTCCGATTCTGTCAACCACACTCTCATTCCCACAGAGCTCTTTTTTCTTCCCCACGCTGCAGTTTTCGATCGCCTTCGACAGACAGCTCTCGACCTCAAAGAAACGGTCGTGAGAGAGACGTGGACGTTGAGTGGAAGGCATCCGCAGGATTATACTTTGTATACTGGAGCATTAGGGACGGCTTTTCTGGCTTTGAAATCCTTCCTAGTTTCTCAAAATATGAATGATCTCAAATTGTGCTCTGAGATTGTCACTGCCTGTGAATCTGTATCTAGAGATTCGAGGCGTGTGTCATTTATCTGTGGCCGAGCTGGAGTTTGTGCTCTTGGTGCAGTTGCAGCGAAGCTCGCTAATGATGGAAGGCTAGTCGACCATTACTTGGAAAAGTTTAAAGAGATCAAACTACCTAGTGATTTACCAAATGAACTGCTATATGGCAGAGCAGGATTCTTATGGGCCTGTTTGTTCCTAAACAAGCACATTGGTCAGAACACGATACCTAAGACTATTATGAGATCAGTGGTGGATGAAGTCATTGAGGCTGGTAGAGGATTGGGTAAGAAGAGGAAATCTCCATTGATGTATGAATGGCATGGGAAGAAGTACTGGGGTGCTGCCCATGGACTGGCTGGAATTATGCATGTCTTGATGAACATGGAACTAAAGCCAGATGAGGTTGAGGATGTCAAGAATACGCTACGTTACATGATTAAAAATCGATTTCCAAGTGGCAATTATCCTTCTAGCGAAGGAAACGAATCTGACCGTCTGGTCCACTGGTGTCATGGGGCTCCTGGGGTTGCACTTACCCTCATAAAAGCAGCTGAGGTTTTTGGAGACAATGAATTTCTGCAAGCGGCATTAGATGCTGGGGAAGTCGTCTGGAACCGTGGTCTACTCAAACGGGTCGGCATCTGCCATGGAATTAGCGGTAACACATATGTGTTTCTTTCTCTTTACCGGTTGACGGGTGATCTCATATACTTATACAGAGCCAAAGCATTTGCATGCTTTCTGCATCAGAATGCACAAAAGCTAATATCAGAAGGGAAAATGCATTCTGGTGATTGCCCTTATTCCTTGTTTGAAGGAATTGGGGGAATGGCATATCTCTTTTTTGACATGATTGAGCCAGATGCAGCAAAGTTCCCATCTTATGAACTGTAA 1251 45.64 MADRFFPNQMPRFLAEAPADELAASDSDSDSVNHTLIPTELFFLPHAAVFDRLRQTALDLKETVVRETWTLSGRHPQDYTLYTGALGTAFLALKSFLVSQNMNDLKLCSEIVTACESVSRDSRRVSFICGRAGVCALGAVAAKLANDGRLVDHYLEKFKEIKLPSDLPNELLYGRAGFLWACLFLNKHIGQNTIPKTIMRSVVDEVIEAGRGLGKKRKSPLMYEWHGKKYWGAAHGLAGIMHVLMNMELKPDEVEDVKNTLRYMIKNRFPSGNYPSSEGNESDRLVHWCHGAPGVALTLIKAAEVFGDNEFLQAALDAGEVVWNRGLLKRVGICHGISGNTYVFLSLYRLTGDLIYLYRAKAFACFLHQNAQKLISEGKMHSGDCPYSLFEGIGGMAYLFFDMIEPDAAKFPSYEL 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20986446 20989660 - Lsi04G013200.1 Lsi04g01320 661369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01320 416 Gene3D - 1 416 IPR012341 GO:0005975
Lsi04g01320 416 SMART LANC_like_2 75 416 IPR007822 -
Lsi04g01320 416 PANTHER LANC-LIKE PROTEIN GCL2 1 416 - -
Lsi04g01320 416 PANTHER LANC-LIKE PROTEIN 1 416 - -
Lsi04g01320 416 Pfam Lanthionine synthetase C-like protein 76 416 IPR007822 -
Lsi04g01320 416 CDD euk_LANCL 81 412 - -
Lsi04g01320 416 PRINTS LanC-like protein superfamily signature 285 305 IPR007822 -
Lsi04g01320 416 PRINTS LanC-like protein superfamily signature 386 403 IPR007822 -
Lsi04g01320 416 PRINTS LanC-like protein superfamily signature 169 184 IPR007822 -
Lsi04g01320 416 PRINTS LanC-like protein superfamily signature 331 344 IPR007822 -
Lsi04g01320 416 PRINTS LanC-like protein superfamily signature 230 246 IPR007822 -
Lsi04g01320 416 PRINTS LanC-like protein superfamily signature 78 96 IPR007822 -
Lsi04g01320 416 PRINTS Eukaryotic LanC-like protein family signature 265 280 IPR020464 -
Lsi04g01320 416 PRINTS Eukaryotic LanC-like protein family signature 347 365 IPR020464 -
Lsi04g01320 416 PRINTS Eukaryotic LanC-like protein family signature 302 323 IPR020464 -
Lsi04g01320 416 PRINTS Eukaryotic LanC-like protein family signature 219 231 IPR020464 -
Lsi04g01320 416 PRINTS Eukaryotic LanC-like protein family signature 2 15 IPR020464 -
Lsi04g01320 416 SUPERFAMILY LanC-like 74 416 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01320 - - - csv:101208071 726.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01320 Lsi-Chr4:20986446 Lsi10g00887 Lsi-Chr10:13162208 5.67E-135 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g259 . Blo03g01538 . Bda09g00498 . Bpe08g01031 . . . . Cma01g01198 . Car01g01023 . Sed01g0663 . Cpe02g00711 Bhi09g03396 Tan01g4417 Cmetu07g0753 . Hepe01g1372 Mch11g1087 . Cla11g01777 Cam11g1841 Cec11g1862 Cco11g1872 Clacu11g2003 Cmu11g1812 Cre11g2220 Cone6ag0132 Cone9ag0157 . . Lsi04g01320 Csa04g02360 Chy07g00089 . . . . . . . Bma07g01188 . . Cmo01g01252 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002987 1 1 1 3 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 2 2 2 2 2 2 4 4 3 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01320 Lsi_Chr04 FPKM 81.344414 77.76825 80.340683 87.72644 66.367844 70.289604 60.71077 85.002365 92.338791 92.57058