Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01322 ATGGCAGTGAGCTTGTTTTCGCATGACGTTTCTGATCTCTGTCTCGGCAAGCCTGCGCTAAGGCCGCTGTCCTTGTCCGCAACCGTCGCCGACGCCTTGTTCGCTCTCCAATTCTCCGACGATTACTTCGTCAGTGTATGGGATTGTCGTTTAGGGAAGAGAAGTTGCAGCGGTGGCCGCAATGGTGGTTCTAGCGGTGGTGATTTTGAGTGCTGCCGGTGTGTCGGGAAGCTGTGTATGGTGGATGTGATTTGCTATCTCTGTAGGGACGAGAATTTGTTGTCCCCTTCGGCTGCATTGGGAGCTTCTATCTCTCAGATTTTGCCTCAAATTCCTGGAATCGTGATGCATCTGGAGCCGTCTGCTAGCTTGATAGAGGCCATTGATCTGGTTCTTCAAGGTGCTCAAAATCTAGTTGTTCCAATCAAGACTAAGCTAGGAAGCAATTCAAGAAGAAAACAGCTCAAAAACCCTACAAATGCCATCCATGGTGGCCGTGAATTCTGCTGGTTGACTCAGGAAGATATAATAAGATATCTCCTCAGCTCAATTGCCCTTTTTTCCCCCATTGCTGCCCTCTCCCTTGACAGCCTTGGCATAATCTGTACCAATGCCTTATCAGTAAACTACCACTCCCCTGCCTCCTCTGCCATTGGATCCATTTCCTGCAGCATCGCCAACCAAACCTCGGTCGCAGTCATCGATGGCGAGGGAATTCTGATTGGTGAGATCTCACCCTTTGCCCTTGCTGGATGCGACAAGGCCGTTGCAGCTGCAATTATGACCTTATCATCTGGTGACCTGATGGCCTACATTGACTGTGGGGGTCCTCCTGAGGATCTTGTTAAGATTGTGAAGGCTCGGCTGAAAGATAGCAACTTGGAAGGAATGCTGGAGGAATTCACTAATTCACCGTACTCAATTGGGTCTGTATCTTTCACTTCTTCTTCATCTGACGAGGAGTTCTCGCCATCTCCAAGCTCGAGAAGGTATAGGAGATCATCAAGCTATTCGGCACGAATTACTCGTCGTTCTGAGGCGATAGTTTGTCATCCAAAAAGCTCTTTGGTAGCTGTTATGATCCAGGCAATTGCACACCGGGTGAACTACGTTTGGGTTATTGAAGACGACTGCAGTTTGATTGGAATGGTCACATTCCTTGATATGTTAAAAGTTTTTAGAGAACATCTCGAAACTATTGAGTAG 1206 47.93 MAVSLFSHDVSDLCLGKPALRPLSLSATVADALFALQFSDDYFVSVWDCRLGKRSCSGGRNGGSSGGDFECCRCVGKLCMVDVICYLCRDENLLSPSAALGASISQILPQIPGIVMHLEPSASLIEAIDLVLQGAQNLVVPIKTKLGSNSRRKQLKNPTNAIHGGREFCWLTQEDIIRYLLSSIALFSPIAALSLDSLGIICTNALSVNYHSPASSAIGSISCSIANQTSVAVIDGEGILIGEISPFALAGCDKAVAAAIMTLSSGDLMAYIDCGGPPEDLVKIVKARLKDSNLEGMLEEFTNSPYSIGSVSFTSSSSDEEFSPSPSSRRYRRSSSYSARITRRSEAIVCHPKSSLVAVMIQAIAHRVNYVWVIEDDCSLIGMVTFLDMLKVFREHLETIE 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21023441 21025454 + Lsi04G013220.1 Lsi04g01322 661371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01322 401 Pfam CBS domain 345 392 IPR000644 -
Lsi04g01322 401 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 1 399 - -
Lsi04g01322 401 ProSiteProfiles CBS domain profile. 341 399 IPR000644 -
Lsi04g01322 401 Gene3D - 328 395 IPR046342 -
Lsi04g01322 401 PANTHER CYSTATHIONINE BETA-SYNTHASE (CBS) FAMILY PROTEIN-RELATED 1 399 - -
Lsi04g01322 401 SUPERFAMILY CBS-domain pair 5 398 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01322 - - - csv:101220357 649.818
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00328 Lsi-Chr1:2880616 Lsi04g01322 Lsi-Chr4:21023441 3.07E-123 dispersed
Lsi04g01322 Lsi-Chr4:21023441 Lsi11g00860 Lsi-Chr11:10890120 2.08E-27 dispersed
Lsi02g00742 Lsi-Chr2:6814670 Lsi04g01322 Lsi-Chr4:21023441 7.27E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g254 . . . . . . . . . . Cma01g01200 Cma09g00878 Car01g01025 Car09g00790 Sed04g3121 Cpe06g00701 Cpe02g00709 Bhi09g03398 Tan01g4413 Cmetu07g1669 . Hepe01g1374 Mch11g1085 . Cla11g01775 Cam11g1839 Cec11g1860 Cco11g1870 Clacu11g2001 Cmu11g1810 Cre11g2218 Cone6ag0134 Cone9ag0159 Cone14ag1072 Cone15ag1065 Lsi04g01322 Csa04g02358 Chy07g00087 . . . . . . . . . . Cmo01g01254 Cmo09g00867 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006788 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 4 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01322 Lsi_Chr04 FPKM 0.582677 2.335852 4.814427 5.002881 4.117965 1.999037 2.276915 48.315945 44.62365 50.542488