Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01323 ATGGCTAAATGGCTTCATTCAACTACCTTTGTGGATTTGCCTTCACATTTGATCTTAGAAGTTCTAACATCTGGTCGGCTGAACGCTCGTGATCTTGTTTGCTTGGAGATGACTTGCAAGTTGTTTGGAGGGAGCCATGAGCTGTACCCTCTCAAGTTTCGGTCATTAGTTGATTTTGCGGCATTTCAATTATGTATATCGCATAACATTTATTCTGGATTGGGAGAGGATTCCCGGAAACAACTCTTTGATCGCTGTCGAGGGAAGTGGAAACGGGTTTTTCGGTTCTTGCAATTGGTGGAGAAATCTTCCAACATCGTTGAGACCTCAGAAGGCAATCAGATGCAGATTTCAACTGGAAGATATCATACATTACTGATCAGCAATGCATCAGTATACTCCTGTGGTTCCAGCTTATGTGGTGTTCTTGGTCATGGCTCTGAGACTACGCAATGTGTAACATTTACGCGAATTAATTTTCCACCTTCTATATACATTCAGCAAGTTTCTGCTTCTCACAACCATGCTGCTTTTGTCACACAGTCAGGACAGGTTTTCACCTGTGGAGATAATTCATCATTTTGTTGTGGGCACAGAGATACAAGCTGTCAAATCTTTAGACCTAGACTTGTTGAAGCATTAAATGGAATTCCTTGCAAGCAGGTCTCTGTGGGGCATAACTTTTCAGTGTTTTTAACAAGACAAGGCCACGTCTATACATGCGGAACAAACACATATGGTCAGCTTGGCCACGGTGATACTCTAGAGGGACCTACGCCGAAGATTGTTCAACAGCTTGTAGAAATTGGATCTGTAATTCAGATTGCTGCTGGTCCAAGTTATGTATTGGCCGTAGTTAATGATGGGAGAGTATACTCTTTTGGGTCAGGATCTAATTTCTGCCTAGGCCATGGAGAGCAGCATAATGAGTTCCAGCCTCGTGTCTTACAGACATTTAGATTGAAGGATATTCATGTTGTTTCTGTATCTGCTGGCGACGAGCATGCAGTGGCATTAGATTCAAATGGTTTTGTATATACTTGGGGAAAAGGCTACTGTGGTGCCTTGGGCCATGGAGATGAGATTGATAAGACTATTCCTCAACCCCTGGACAGCCTTAAGAACCACCTTGCAGTGCAGGTATGTGCAAGAAAGAGGAAAACTTTTGTGTTGCTGGACACTGGTATTGTTTATGGTTTTGGGTGGATGGGGTTTGGTAGCCTTGGATTTCCAGACAGAGGAGTATCTGACAAAGTCTTGAGACCTCGATGCCTCGACAGCTTAAGAGTTTACCGTGTTTCTCAAATCAGCACCGGGCTGTATCACACTGTCATGGTTACTGAGAAAGGAAAAGTATTCGGCTTCGGAGATAATGAACGAGCACAACTGGGGCATGAATCTCTGAGAGGCTGCCTTCAACCCACTGAGATCTTCATGCAGGATTCAGAATCTGGGTCGTTAGCCTAG 1467 43.9 MAKWLHSTTFVDLPSHLILEVLTSGRLNARDLVCLEMTCKLFGGSHELYPLKFRSLVDFAAFQLCISHNIYSGLGEDSRKQLFDRCRGKWKRVFRFLQLVEKSSNIVETSEGNQMQISTGRYHTLLISNASVYSCGSSLCGVLGHGSETTQCVTFTRINFPPSIYIQQVSASHNHAAFVTQSGQVFTCGDNSSFCCGHRDTSCQIFRPRLVEALNGIPCKQVSVGHNFSVFLTRQGHVYTCGTNTYGQLGHGDTLEGPTPKIVQQLVEIGSVIQIAAGPSYVLAVVNDGRVYSFGSGSNFCLGHGEQHNEFQPRVLQTFRLKDIHVVSVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIDKTIPQPLDSLKNHLAVQVCARKRKTFVLLDTGIVYGFGWMGFGSLGFPDRGVSDKVLRPRCLDSLRVYRVSQISTGLYHTVMVTEKGKVFGFGDNERAQLGHESLRGCLQPTEIFMQDSESGSLA 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21028025 21033795 - Lsi04G013230.1 Lsi04g01323 661372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01323 488 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 395 449 IPR000408 -
Lsi04g01323 488 PANTHER BNAA01G28890D PROTEIN 9 483 - -
Lsi04g01323 488 Pfam Regulator of chromosome condensation (RCC1) repeat 342 383 IPR000408 -
Lsi04g01323 488 Pfam Regulator of chromosome condensation (RCC1) repeat 236 285 IPR000408 -
Lsi04g01323 488 Pfam Regulator of chromosome condensation (RCC1) repeat 288 339 IPR000408 -
Lsi04g01323 488 Pfam Regulator of chromosome condensation (RCC1) repeat 182 232 IPR000408 -
Lsi04g01323 488 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 288 IPR000408 -
Lsi04g01323 488 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 343 394 IPR000408 -
Lsi04g01323 488 Gene3D - 64 269 IPR009091 -
Lsi04g01323 488 PRINTS Chromosome condensation regulator RCC1 signature 452 466 IPR000408 -
Lsi04g01323 488 PRINTS Chromosome condensation regulator RCC1 signature 345 361 IPR000408 -
Lsi04g01323 488 PRINTS Chromosome condensation regulator RCC1 signature 436 452 IPR000408 -
Lsi04g01323 488 PRINTS Chromosome condensation regulator RCC1 signature 290 306 IPR000408 -
Lsi04g01323 488 PRINTS Chromosome condensation regulator RCC1 signature 326 339 IPR000408 -
Lsi04g01323 488 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 450 488 IPR000408 -
Lsi04g01323 488 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 483 - -
Lsi04g01323 488 Pfam Regulator of chromosome condensation (RCC1) repeat 433 461 - -
Lsi04g01323 488 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 329 339 IPR000408 -
Lsi04g01323 488 Gene3D - 270 485 IPR009091 -
Lsi04g01323 488 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 289 342 IPR000408 -
Lsi04g01323 488 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 436 446 IPR000408 -
Lsi04g01323 488 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 183 235 IPR000408 -
Lsi04g01323 488 SUPERFAMILY RCC1/BLIP-II 113 412 IPR009091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01323 - - - csv:101207584 946.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00635 Lsi-Chr4:5827505 Lsi04g01323 Lsi-Chr4:21028025 2.31E-15 dispersed
Lsi04g01323 Lsi-Chr4:21028025 Lsi01g01987 Lsi-Chr1:26473030 3.76E-08 dispersed
Lsi04g01323 Lsi-Chr4:21028025 Lsi10g01085 Lsi-Chr10:15110776 4.31E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g253 . Blo03g01540 . Bda09g00499 . . . . . . Cma01g01201 Cma09g00877 Car01g01026 Car09g00789 Sed04g3120 Cpe06g00700 Cpe02g00708 Bhi09g03400 Tan01g4411 Cmetu07g0621 . Hepe01g1375 Mch11g1083 . Cla11g01774 Cam11g1838 Cec11g1859 Cco11g1869 Clacu11g2000 Cmu11g1809 Cre11g2217 . . . . Lsi04g01323 Csa04g02357 Chy07g00086 . . . . . . . Bma07g01184 . . Cmo01g01255 Cmo09g00866 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004199 2 2 1 3 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01323 Lsi_Chr04 FPKM 8.332302 9.420318 14.424087 15.302123 15.407961 16.895741 16.093513 17.272161 16.985159 15.799132