Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01324 ATGGCTGAAAATGCCTCCCCAGAGGGGAGATCTCTGGCTCTGACGCCTACTTGGTCTGTTGCTTCTGTGTTGACAATTTTTGTTGCCGTTTCATTGCTCGTAGAACGCTCCATTCATAGGCTAAGCTCTTGGCTGGGAAAAACTCATAGAAAACCCTTATTTGAGGCAGTGGAGAAAATGAAAGAAGAGTTAATGCTGCTTGGATTTATTTCTTTGCTTCTGACGGCATCATCGAGTCTGATATCAAATATCTGCATTCCATCCAAGTTTTATGATACCTCTTTTATTCCATGCTCCCAGTCGGAGATTGATGAACAAAATGCGGATAATTCTTCATCTGAGAAGCGAAAGCTATTAACGGTTTCTGTTTTCCCACATTTGTATAGGAAGATGCTAACTGGTCACGAGCCCTTTGTTTCATATGAAGGGCTTGAGCAATTGCATCGCTTTATCTTTGTAATGGCAGTAACTCATATATCTTATAGTTGCTTAACCATGTTGCTGGCAATTGTGAAGATCCACAGTTGGAGAGTATGGGAAAATGAAGCTCACATGGACCACCATGATTTATTCAATGGTGAGCTCTATGATTATGTTATGTATCTTCTCTTAGCCACTGAAAGAGTTCACAAGGAATCTGAGAGTTCAAACCCAAAACTTTGGAGGATATCTCCGACCATATGCCAAGCCCATACCACCATAATACCAGATTCCAAGAACAATGAGAAGTTATTGACATATTTTAAATATGATGCTAAAAACTACATATCAACTGCTACATGTTTCTTCCGGCAATTTGGGCGTTCTGTTGTTCGTTCTGACTACCTTACACTTCGCAAAGGCTTCATCACGAATCACAACCTCTCATCAAGATATGATTTCCATAGCTACATGGTGCGTTCTATGGAAGAAGAATTCCAGAGGATAGTTGGTGTGAGCGGTCCATTATGGGGATTTGTCGTTGCTTTTTTGCTGTTTAATGTGAAAGGCTCTAACCTATATTTTTGGATAGCAACTATTCCTGTTACTCTTGTTCTTTTAGTGGGCACAAAGTTACAGCATGTTATTGCAACTTTGACGTTGGAGAATGCTGGTATAACCGGATTCTTTTCTGGAGCAAAGCTTAGGCCCCGTGATGATCTTTTCTGGTTTAAGAAGCCTGAACTCCTGTTGTCCTTGATCCATTTTGTTCTTTTCCAGGCAAAATGCTTTCGAGTTGGCTTCGTTCTTCTGTGGCAATTTGGATATAGTTCTTGCTTCATTAGCAATCATCTGCTTGTCTATGTAAGGCTAATCTTGGGTTTTGCCGGACAATTTCTTTGCAGCTATAGCACCTTGCCCCTGTACGCACTGGTTACTCAGATGGGAACAAACTACAAGGCTGCCTTGATTCCTCAAAGAATAAGGGAAACAATCCATGGGTGGGGTAAGTCAGCTAGAAGGAAGAGAAGGCTCCGGATATTTACTGATGATGCCACAATCCACACAGAAACAAGCACGGTGATGTCACTTGAGGACGACGACAACCAGCATGTCGATACACCTAAAACTGCCACTGGCTATGCCGTAATTGAGATGCAGCCACCTACTGCAGCGAATGTGTCCGTCTCGATCACTAATGATGCATCACGTGCGGTTAGAACTCCCCTTCTTCAACCCTCTCTGTCTCTTTCCTTACCTGTGGCTCAAAACTTCAATGCTGGAGCCCCATTAAGAAGCTCATCTATGCCGGCTCAAAACTTCAATGTCGAAAACTCTTTAAGAAGCGCATCTATGCCGAGATGA 1785 42.46 MAENASPEGRSLALTPTWSVASVLTIFVAVSLLVERSIHRLSSWLGKTHRKPLFEAVEKMKEELMLLGFISLLLTASSSLISNICIPSKFYDTSFIPCSQSEIDEQNADNSSSEKRKLLTVSVFPHLYRKMLTGHEPFVSYEGLEQLHRFIFVMAVTHISYSCLTMLLAIVKIHSWRVWENEAHMDHHDLFNGELYDYVMYLLLATERVHKESESSNPKLWRISPTICQAHTTIIPDSKNNEKLLTYFKYDAKNYISTATCFFRQFGRSVVRSDYLTLRKGFITNHNLSSRYDFHSYMVRSMEEEFQRIVGVSGPLWGFVVAFLLFNVKGSNLYFWIATIPVTLVLLVGTKLQHVIATLTLENAGITGFFSGAKLRPRDDLFWFKKPELLLSLIHFVLFQAKCFRVGFVLLWQFGYSSCFISNHLLVYVRLILGFAGQFLCSYSTLPLYALVTQMGTNYKAALIPQRIRETIHGWGKSARRKRRLRIFTDDATIHTETSTVMSLEDDDNQHVDTPKTATGYAVIEMQPPTAANVSVSITNDASRAVRTPLLQPSLSLSLPVAQNFNAGAPLRSSSMPAQNFNVENSLRSASMPR 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21042641 21050456 + Lsi04G013240.1 Lsi04g01324 661373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01324 594 MobiDBLite consensus disorder prediction 570 594 - -
Lsi04g01324 594 Pfam Mlo family 253 492 IPR004326 GO:0006952|GO:0016021
Lsi04g01324 594 Pfam Mlo family 10 189 IPR004326 GO:0006952|GO:0016021
Lsi04g01324 594 PANTHER MLO-LIKE PROTEIN 1 5 529 IPR004326 GO:0006952|GO:0016021
Lsi04g01324 594 PANTHER MLO-LIKE PROTEIN 11 5 529 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01324 K08472 MLO; mlo protein - csv:101207170 965.296
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01324 Lsi-Chr4:21042641 Lsi09g01887 Lsi-Chr9:27665414 1.15E-81 dispersed
Lsi02g01541 Lsi-Chr2:21259002 Lsi04g01324 Lsi-Chr4:21042641 1.39E-87 transposed
Lsi05g00163 Lsi-Chr5:2369569 Lsi04g01324 Lsi-Chr4:21042641 1.53E-20 transposed
Lsi07g01097 Lsi-Chr7:16356654 Lsi04g01324 Lsi-Chr4:21042641 4.38E-102 transposed
Lsi04g01324 Lsi-Chr4:21042641 Lsi08g00776 Lsi-Chr8:16142106 5.73E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g246 Blo03g00649 Blo03g01542 Bda07g00291 . . Bpe08g01029 . . . . Cma01g01204 Cma09g00875 Car01g01028 Car09g00788 Sed04g1597 Cpe06g00699 . Bhi09g03403 Tan01g0784 Cmetu04g0308 . . . . Cla11g01772 Cam11g1837 Cec11g1858 Cco11g1866 Clacu11g1998 Cmu11g1807 Cre11g2216 Cone6ag0137 Cone9ag0162 . . Lsi04g01324 Csa04g02353 Chy07g00085 . . . . . Bpe11g00487 . Bma07g01182 . . Cmo01g01256 Cmo09g00864 Cma04g00535 . Car04g00505 . . . . . . . . . . Cla05g01024 Cam05g1118 Cec05g1128 Cco05g1118 Clacu05g1109 Cmu05g1058 Cre05g1133 . . Chy06g01139 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g01324 . 5 577 MLO family AT5G53760 62.1 4.0e-188 654.8
Lsi02g01541 . 3 606 MLO family AT5G53760 55.5 4.9e-178 621.3
Lsi02g01432 . 10 470 MLO family AT3G45290 54.0 2.4e-136 482.6
Lsi04g01324 . 1 558 MLO family AT1G26700 60.8 4.6e-181 631.3
Lsi02g01541 . 3 606 MLO family AT1G26700 54.8 3.0e-172 602.1
Lsi02g01429 . 8 510 MLO family AT2G39200 66.0 6.0e-192 667.5
Lsi04g00059 . 7 529 MLO family AT2G39200 65.0 4.3e-190 661.4
Lsi10g01281 . 8 483 MLO family AT2G39200 53.2 3.5e-147 518.8
Lsi02g01429 . 1 416 MLO family AT1G61560 66.1 7.7e-157 550.4
Lsi04g00059 . 7 413 MLO family AT1G61560 64.7 1.3e-151 533.1
Lsi10g01281 . 1 336 MLO family AT1G61560 59.2 5.8e-120 427.9
Lsi01g00525 . 10 461 MLO family AT2G17430 54.7 8.6e-140 494.2
Lsi02g01429 . 5 458 MLO family AT2G17430 51.1 1.9e-123 439.9
Lsi07g01039 . 28 451 MLO family AT2G17430 50.7 4.0e-113 405.6
Lsi01g00525 . 28 538 MLO family AT2G17480 56.0 1.5e-161 566.6
Lsi02g01429 . 8 463 MLO family AT2G17480 52.4 7.7e-126 448.0
Lsi08g00776 . 9 436 MLO family AT2G17480 50.8 2.3e-114 409.8
Lsi08g00776 . 12 369 MLO family AT1G42560 56.7 2.6e-114 409.1
Lsi01g00525 . 28 353 MLO family AT1G42560 52.6 1.1e-101 367.1
Lsi09g01887 . 6 413 MLO family AT4G24250 50.2 2.7e-98 355.9
Lsi01g00525 . 8 354 MLO family AT5G65970 60.9 1.5e-124 443.4
Lsi08g00776 . 8 367 MLO family AT5G65970 54.5 3.8e-107 385.6
Lsi02g01429 . 2 381 MLO family AT5G65970 51.1 9.7e-103 370.9
Lsi10g01281 . 2 337 MLO family AT5G65970 50.4 1.6e-89 327.0
Lsi07g01039 . 27 349 MLO family AT5G65970 50.5 1.3e-86 317.4
Lsi02g01429 . 6 488 MLO family AT2G33670 50.1 9.1e-128 454.1
Lsi01g00525 . 18 441 MLO family AT2G33670 53.4 2.0e-127 453.0
Lsi04g00059 . 64 530 MLO family AT1G11310 63.7 2.0e-167 585.9
Lsi02g01429 . 63 506 MLO family AT1G11310 64.4 1.0e-163 573.5
Lsi10g01281 . 63 454 MLO family AT1G11310 51.9 2.6e-122 436.0
Lsi09g01887 . 5 489 MLO family AT2G44110 54.9 6.4e-142 501.1
Lsi09g01887 . 1 496 MLO family AT4G02600 66.8 1.3e-185 646.4
Lsi09g01887 . 1 496 MLO family AT4G02600 66.8 1.3e-185 646.4
Lsi04g00059 . 64 530 MLO family AT1G11310 63.7 2.0e-167 585.9
Lsi02g01429 . 63 506 MLO family AT1G11310 64.4 1.0e-163 573.5
Lsi10g01281 . 63 454 MLO family AT1G11310 51.9 2.6e-122 436.0
Lsi02g01432 . 10 470 MLO family AT3G45290 54.0 2.4e-136 482.6
Lsi02g01429 . 6 488 MLO family AT2G33670 50.1 9.1e-128 454.1
Lsi01g00525 . 18 441 MLO family AT2G33670 53.4 2.0e-127 453.0
Lsi02g01429 . 1 416 MLO family AT1G61560 66.1 7.7e-157 550.4
Lsi04g00059 . 7 413 MLO family AT1G61560 64.7 1.3e-151 533.1
Lsi10g01281 . 1 336 MLO family AT1G61560 59.2 5.8e-120 427.9
Lsi01g00525 . 10 461 MLO family AT2G17430 54.7 8.6e-140 494.2
Lsi02g01429 . 5 458 MLO family AT2G17430 51.1 1.9e-123 439.9
Lsi07g01039 . 28 451 MLO family AT2G17430 50.7 4.0e-113 405.6
Lsi01g00525 . 28 538 MLO family AT2G17480 56.0 1.5e-161 566.6
Lsi02g01429 . 8 463 MLO family AT2G17480 52.4 7.7e-126 448.0
Lsi08g00776 . 9 436 MLO family AT2G17480 50.8 2.3e-114 409.8
Lsi08g00776 . 12 369 MLO family AT1G42560 56.7 2.6e-114 409.1
Lsi01g00525 . 28 353 MLO family AT1G42560 52.6 1.1e-101 367.1
Lsi01g00525 . 8 354 MLO family AT5G65970 60.9 1.5e-124 443.4
Lsi08g00776 . 8 367 MLO family AT5G65970 54.5 3.8e-107 385.6
Lsi02g01429 . 2 381 MLO family AT5G65970 51.1 9.7e-103 370.9
Lsi10g01281 . 2 337 MLO family AT5G65970 50.4 1.6e-89 327.0
Lsi07g01039 . 27 349 MLO family AT5G65970 50.5 1.3e-86 317.4
Lsi04g01324 . 5 577 MLO family AT5G53760 62.1 4.0e-188 654.8
Lsi02g01541 . 3 606 MLO family AT5G53760 55.5 4.9e-178 621.3
Lsi02g01429 . 8 510 MLO family AT2G39200 66.0 6.0e-192 667.5
Lsi04g00059 . 7 529 MLO family AT2G39200 65.0 4.3e-190 661.4
Lsi10g01281 . 8 483 MLO family AT2G39200 53.2 3.5e-147 518.8
Lsi09g01887 . 6 413 MLO family AT4G24250 50.2 2.7e-98 355.9
Lsi04g01324 . 1 558 MLO family AT1G26700 60.8 4.6e-181 631.3
Lsi02g01541 . 3 606 MLO family AT1G26700 54.8 3.0e-172 602.1
Lsi09g01887 . 5 489 MLO family AT2G44110 54.9 6.4e-142 501.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001851 1 6 2 2 2 1 3 2 1 2 2 2 3 2 2 3 1 2 2 2 2 2 2 2 2 2 2 3 4 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01324 Lsi_Chr04 FPKM 24.414206 22.901306 31.849848 30.717648 19.714128 16.630953 19.277248 4.226271 3.744409 3.681753