Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01330 ATGGAGGAGGAGGCTGTTCAGCAATATCTTTACGATACTCTAAGCCCACTTTCCTTCTCCGCCGTCACTACCACCGAAAGCGGAGACCAGTTGTCGCCGTCCGATGACCTCGAGCCCTATTCCGTTTTCCGCAACGAGATCTCTCTCTCTACTTCCCATTCTGCTCCGGCTGAGACTGCAGCACCCGAGTTTTTTTCCCTAGATGTTGCTGCCGACAACGTGGGGGAAATTTCGGCCTTTTCTACTCCTTTGCCGGTTACTTCGGCTCTGGAAACTGAGCCTAGGACGCCGGAACGTGAGGATCAGTCGAGGCTTGAAATTGGGTGGTTCCGTGGCAATAGTGGATTCAAGAGCCCTATGCTACAGTTGCATAAAGAAATAGTTGATTTTTGTGAGTTTCTATCTCCAACTGAAGAAGAACGTGTTGCACGTGACAGTGCAGTAGAAAGGGTTTTTAGTGTTGTCAAACATATATGGCCTCATTGTAAGGTTGAAGTTTTTGGATCGTTTCAGACGGGACTTTATCTTCCAACCAGTGACATTGATGTTGTTATTCTGGGTTCAGGCATCCCAAAACCACAACTTGGATTGCAAGCTCTTTCCAGGGCTTTATCACAAAAGGGAATAGCAAAAAAGATTCAGGTTATTGGAAAGGCTCGTGTGCCAATAATTAAGTTTGTCGAAAAGCAAAGTGGTATATCTTTTGACATAAGAAAAACAGCTGAGCCAAAAGTGATTAGGGAATTGACATCGTATCTCTTGCTCAACAGTTTTGACGTGCAGAATGGACCAAAGGCTGCTGATTTTATAAAGGGTGCAATCAGTAAGTGGCCTCCTTTGCGTCCTTTGTGTTTGATCTTAAAGGTGTTTTTGCAGCAGAGAGAACTGAATGAGGTATATTCTGGTGGACTAGGTTCCTATGCACTTCTTACCATGCTTATGGCGATGTTGCAGGAAGCATTTTGTTTGAGTTTCAACGGGCCACACTCTTCTCTTGAACACAACCTGGGAGTCCTTTTGGTATGTTTTTCATTTTTTGTACATTTCTTTGATTTTTATGGTCGCAAATTGAATACTTCTGATGTTGGTGTATCTTGCAATGCGGGAGGCATTTTTTTCTCGAAGAGTTACAGAGGATTCGTGACAAAAGGACGCCCATGTCTTCTTTCCATTGAGGATCCTCAGGTTTATTTTCTAGCCCCAGATAATGACATTGGCAAGAATTCCTTCAATTACTTCCAGATAAGATCTGCATTTGCAATGGCCTTTTCGATCTTAACAAATGTTAAGACCATTTTAGGGCTGGGTCCAAACCGGAGTATTCTTGGCACAATAATCAGACCCGATCCAGTCTTATTGAAGCGAAAAGGTGGCAAAGATGGAGAAGTGACCTTTAATTCTCTACTGCCTGGAGCAGGGGAACCTATACAACAACCAGAGTATGGGGATGGTCAAGAGATGCTGTGTAATTGGCAGTTTGGTGACGATGAACCATTGCCACGAGGGAATGACACATCTGAAAATTTTGGTACACTTTCCTCTAAAAAAAAGAGAAAAGCTCGGGAGAAGTCCAGAAAGAAGGAAAAAGAAAACCATATGAGTAAGCGCAGGCATGAAGTCAATGGATGCAGTAAAGAGAAGAGTTCAAAAAAGAAACGATGGAAACTGAATGGCAGTGATGCCAATGGTTTTGGGCATGCTGGCAGAAGGTCTCCTTGGAGCCGATAA 1728 43.69 MEEEAVQQYLYDTLSPLSFSAVTTTESGDQLSPSDDLEPYSVFRNEISLSTSHSAPAETAAPEFFSLDVAADNVGEISAFSTPLPVTSALETEPRTPEREDQSRLEIGWFRGNSGFKSPMLQLHKEIVDFCEFLSPTEEERVARDSAVERVFSVVKHIWPHCKVEVFGSFQTGLYLPTSDIDVVILGSGIPKPQLGLQALSRALSQKGIAKKIQVIGKARVPIIKFVEKQSGISFDIRKTAEPKVIRELTSYLLLNSFDVQNGPKAADFIKGAISKWPPLRPLCLILKVFLQQRELNEVYSGGLGSYALLTMLMAMLQEAFCLSFNGPHSSLEHNLGVLLVCFSFFVHFFDFYGRKLNTSDVGVSCNAGGIFFSKSYRGFVTKGRPCLLSIEDPQVYFLAPDNDIGKNSFNYFQIRSAFAMAFSILTNVKTILGLGPNRSILGTIIRPDPVLLKRKGGKDGEVTFNSLLPGAGEPIQQPEYGDGQEMLCNWQFGDDEPLPRGNDTSENFGTLSSKKKRKAREKSRKKEKENHMSKRRHEVNGCSKEKSSKKKRWKLNGSDANGFGHAGRRSPWSR 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21079852 21085391 - Lsi04G013300.1 Lsi04g01330 661379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01330 575 MobiDBLite consensus disorder prediction 526 557 - -
Lsi04g01330 575 PANTHER INACTIVE NON-CANONICAL POLY(A) RNA POLYMERASE PROTEIN TRF4-2-RELATED 98 552 - -
Lsi04g01330 575 CDD NT_PAP_TUTase 143 271 - -
Lsi04g01330 575 SUPERFAMILY PAP/OAS1 substrate-binding domain 278 431 - -
Lsi04g01330 575 Gene3D Beta Polymerase, domain 2 136 242 IPR043519 -
Lsi04g01330 575 Pfam Cid1 family poly A polymerase 345 395 IPR002058 -
Lsi04g01330 575 Pfam Nucleotidyltransferase domain 150 242 IPR002934 GO:0016779
Lsi04g01330 575 PANTHER POLY(A) RNA POLYMERASE 98 552 IPR045862 GO:0004652|GO:0031499|GO:0043631
Lsi04g01330 575 MobiDBLite consensus disorder prediction 492 575 - -
Lsi04g01330 575 SUPERFAMILY Nucleotidyltransferase 119 237 IPR043519 -
Lsi04g01330 575 Gene3D - 249 448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01330 K03514 PAPD5_7, TRF4; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] - csv:101206043 904.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01330 Lsi-Chr4:21079852 Lsi05g02211 Lsi-Chr5:28671186 1.90E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g231 . Blo03g01544 . Bda09g00502 . Bpe08g01027 . . . . . Cma09g00871 . Car09g00783 Sed07g2511 Cpe06g00694 . Bhi09g03406 Tan01g4404 Cmetu07g1473 . Hepe01g1380 Mch11g1076 . Cla11g01768 Cam11g1834 Cec11g1855 Cco11g1862 Clacu11g1995 Cmu11g1804 Cre11g2212 Cone6ag0140 . . . Lsi04g01330 Csa04g02350 Chy07g00083 . . . . . . . Bma07g01180 . . . Cmo09g00859 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012201 1 1 1 0 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01330 Lsi_Chr04 FPKM 5.09251 3.422338 6.941269 7.107135 3.904606 3.896737 4.065581 30.629034 33.218468 37.327305