Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01334 ATGTGGAAGTATGGTTGCATTTTAAAACTTCAACAGCCTCCGGCAAAGAAACCACAATCGTCGGCCGGTGGAGCTTCTGATTGGATTGGCTTTGGAGTCCACTTCTCTTTGAGGCTTCAACGAGTCACCACTGCAATCGGCTTTGGGGAAGGAACACTGGGTTTAAGAGTTGAGTTCTTTACGGGAGATGAAAGTCGAAGTTGTGGGGTTGGAGGTATAATGACTGGAGGGTCATTGGGTCTTCGTACGGGAAGCTATGCATCACTGCATCAACAGCTACAAAATGGTGCTTTGCAAAATTCAGCAACGTCACTGCTTGTGCACAAGCCTTCGAAAACAAATCTTTCAAGCTCAAGGGAGAGGGAGAGAATTATTCCCTTGTTTTGTCGATACTTTGGTCGGAGAAGGGTTGCGATGCTCCTCTTGTTTATCCTTGCTCTTTTGGTTTTTGTATTTGGATCCTTTGCAGTCAGTAGAGATAGCAGTGATTTAAAGCCATCGTATGAAGAAACTACACTAAGGGATTTGATAAATCCTGCTGTTCGAAGAACAGAAGACTTCAAGGATCTTATAACTTCTACACATGGGAATTTGATGGGAAGAACTGAAGTTTCATCTCTGCTTCCTCCTTTCCCTCATTCAAATAGTTCTTTAATCTCTAATTTTTTTCCTCAACATTCCCTTTCATCGCCACATCCATGCAGAAACTTTGCGCTTCCTCCTCCAGCTCCAGCTAACGGAAAGCGGACTGGAGCACGACCCTGTCCAGTATGTTATATCCCTGTGGAGCAGGCTATTGCTAGTATGCCAATTGCACCATCAATATCTCCTGTACTACGCTATTTAACATATATTCATGACGGAAATCCAATAAAAACAGAACCACATGGGGGGTCTGATTTTGGTGGATATCCTTCTTTAAGACAGAGAAATGATTCTTTTAATATAAAAGAGTCGATGACAGTTCACTGTGGATTTGTTAAAGGAAGTAAACCTGGTAATCAGAGTGGTTTCGATATTGATGAAGCCGACCTTTTGGAGTTGGAGGAGTTTCATGAGGTCATTGTTGCATCAGCCATATTTGGAAACTACGATGTATTACAGCAGCCTATTAATATTAGTGAAGAATCAAAAAGATTTGTTCCTTTCTACATGTTCATTGATGAAGAAACAGAAGCATATATGAAGAACTCTAGCCTCTTAGATAGCAGAAGGAGGATTGGCTTGTGGAGAATCATTGTAGTTCGTAATGTTCCTTATGCTGATTCAAGACGTAATGGCAAGATTCCCAAGCTTCTTCTGCATAGGCTTTTCCCAAACATTCAATACTCTATATGGATAGATGGAAAACTTCAGCTTGTTGTGGATCCATTCCAAATTCTTGAGAGGTTCTTGTGGCGTCAAAATGCAACTTTTGCTATTTCAAGACACTATAAACGATTTGACGTCTTTGAAGAGGCTGATGCTAATAAGGCTGCAGGAAAATATGACAATTCCTCCATTGATGAGCAGATTGATTTTTATGTTAGAGAGGGTTTAACACCATATTCTTTGGCTAAGCTTCCTATAACAAGTGATGTTCCGGAAGGATGCGTTCTAATTCGAGAACATGTTCCTATAACAAATTTATTCACTTGCCTTTGGTTCAATGAAGTTGATCGTTTTACTTCAAGGGATCAGTTAAGCTTCTCGATGGTGAGAGATAAGATAATGTCAAAAGTCAATTGGAGCATTAACATGTTCTTGGATTGTGAAAGGCGCAATTTTGTTATACAGGTCTTGAACTCCTTTCTTCTGACGTATCATAGAGAACTACTGGAACACATGCCACCTCCTGTCAGAGTAGTTATCCGCCGTTCTTCGCCCGTGCCCGACGGTCATACTGTTTCTAAGCCTCCGGTTCATATTGTTCAGAAGGCTCCACCAGTAAAAAGAAATCCTTCCAAGCGGGGAAGAAGTGATAAGAGGAAACGTGAAATATCATCTGCTTCCACTTCTGGGTTTATGAAACCCCACTCGCCGATGATCAAACGGGCTTCCAAAATGCTTAAAAACAAAGGGATAATTCCACTCGATGTGATTGATGTTGACGAAGATGAAGCTTCCGATAGTGCCATGTTTATTCACCACAAGTTTGACGCAAATGACAAAGGAAAGGGTTTATATCACCATAGTGATCATCAATTGAAGAAAACATTGGGTAGCCATTCATTTAATCCAGATGTGGAATTCCTAGAGAGTACAAATGAAGTTGAATCTAATTTTCCCTCAGCATCACATAATTTGATTGACCTAGACAATCCTTGCTCTTATTCATCAAATGAAGATGACGACTGGATAGGATTTGATGAAATCATGGATGTGGATGCATATTCAGCTTTGCAAGCCCATTTTGATCATATGGATATTCCTCCTGATATTGAAGCACCAATTCCTTGGCTGCCTCAGGATCAAAATGGAAACAAGACCAACATTGAAACTAGCAGAACCTCATGGTCATCATTTGCAGAACCTCAAAGCGTACCAGGTTCTGTTAATCATCTAGGAAAATCAAGTGGTCAAGTTCAGCTGAAGGAAGCCATATCAACTAGCCTACACTTGCCTGCTGACATTAGTGTTCTGAATCATCTTGATCCTTTTGCTCCGTTTCCTTTACAAGATATTCAACCAAGTAAGAAATCAGCTGCATCCCGCTACAGGGACAAATCCGAGGTTAGTCACTTAAATTCTTTACTTGGTATTGATGCAGCTAAATCCCGGTGGTTTTTGGATCCTTTTAAGCGTAAAAAGAAGCTACATGGTTCAAATAACATTTCTATTAACCCGTCGGATGCAATGAAGCTCCATAATGGAGGTGAGACATCTGATACATCTGGCAGTGTAAAGAAGCAAGTCAGTTCACATAATATGTCCCATACAAACTTCCCAGCATATATGGACTTCTTTGGGTATCCGGAAGCAGGACAATCTATGCCCTATTGGCCTGAATATGAGAAAATGAAAACCAAGGAGCCATTTTTCCCCCCTCATATGGCTTCAGGTCTTTATGGGCCGTTTAATCCTCTTGTTCCTCCTACCTTTGGGGAAGTTGTAGATATGCCATGGGTTCAGGGTTCCACCCAAAATCTCCCAAATATTGCTCCAGACGACTCGATAAGCGTAACAATTTCACCTGCAGACATGGATAAACTCTTGGAGAACTTTGAGCAATTTAAACAATTTGATACTGTTGACGATCATTCTGACCATCACTATACTAGCAAAGGTTCTAGCATGAACCAGGCGTCAAAGAAATGGACAAAGAAAATTCAGGACGACTGGAAGATCCTGCAAAATGATTTACCTGGTAGATTTTCCCTTTTCTTTTCCTCCATTTTGAACATATTGTATGTTCTTGTTAAAATAAGGGTATATGAGTCGAGAATGGATCTTATGAGGGCTGTCATCATTGGAGCACAGGGTACTCCATACCATGATGGACTATTTTTTTTTGACATATTTTTCCCTACTCGTTATCCGGACCTACCCCCACAAGTTTATTACCACTCTAAGGGCCTTCGACTTAACCCGAACTTGTATAATTGTGGGAAAGTATGTCTAAGTCTGCTTAACACCTGGCGTGGCAGTGGAAATGAGAATTGGGTTCCTGGCATGTCAACTATGCTTCAGGTTCTTGTCTCTATCCAAGGGTTGATCTTGAATACAAAGCCCTACTTTAACGAGCCTGGGTATGCATATCAAAGTGGATCGGAGGCGGGTGAGAATAGGTCCCAGCAGTATAATGAGGAGACATACATCCTATCTATTAGAACCATGTTGTTTAACATCAGGAGACCGCCAAAGCATTTTGAGGACTTTGTTAGGGGACATTTCTACAAAAGGGCTCATGATATTCTGGTGGCATGCAAGGCGTATATAAATGGTGCTCAGGTGGGATCTCTAGTTGAAGGCGGGGTACAAGATCTCGAGCTGAGCGACAAGAGCTGCTCAGACAATTTTAAGCAATCTGTGACCCATCTTTTGAGTCAGCTTGTTGAGGCTTTTAAGGGAATTGGGGTCAATGACTGCGATAAGTACCTGCAACTGCTACCGACGCCTGTATCAAATGCAAGAAAGCGATCAGGTAGGCACAGTAAAGCTCAGTTAAAGTAG 4152 41.43 MWKYGCILKLQQPPAKKPQSSAGGASDWIGFGVHFSLRLQRVTTAIGFGEGTLGLRVEFFTGDESRSCGVGGIMTGGSLGLRTGSYASLHQQLQNGALQNSATSLLVHKPSKTNLSSSRERERIIPLFCRYFGRRRVAMLLLFILALLVFVFGSFAVSRDSSDLKPSYEETTLRDLINPAVRRTEDFKDLITSTHGNLMGRTEVSSLLPPFPHSNSSLISNFFPQHSLSSPHPCRNFALPPPAPANGKRTGARPCPVCYIPVEQAIASMPIAPSISPVLRYLTYIHDGNPIKTEPHGGSDFGGYPSLRQRNDSFNIKESMTVHCGFVKGSKPGNQSGFDIDEADLLELEEFHEVIVASAIFGNYDVLQQPINISEESKRFVPFYMFIDEETEAYMKNSSLLDSRRRIGLWRIIVVRNVPYADSRRNGKIPKLLLHRLFPNIQYSIWIDGKLQLVVDPFQILERFLWRQNATFAISRHYKRFDVFEEADANKAAGKYDNSSIDEQIDFYVREGLTPYSLAKLPITSDVPEGCVLIREHVPITNLFTCLWFNEVDRFTSRDQLSFSMVRDKIMSKVNWSINMFLDCERRNFVIQVLNSFLLTYHRELLEHMPPPVRVVIRRSSPVPDGHTVSKPPVHIVQKAPPVKRNPSKRGRSDKRKREISSASTSGFMKPHSPMIKRASKMLKNKGIIPLDVIDVDEDEASDSAMFIHHKFDANDKGKGLYHHSDHQLKKTLGSHSFNPDVEFLESTNEVESNFPSASHNLIDLDNPCSYSSNEDDDWIGFDEIMDVDAYSALQAHFDHMDIPPDIEAPIPWLPQDQNGNKTNIETSRTSWSSFAEPQSVPGSVNHLGKSSGQVQLKEAISTSLHLPADISVLNHLDPFAPFPLQDIQPSKKSAASRYRDKSEVSHLNSLLGIDAAKSRWFLDPFKRKKKLHGSNNISINPSDAMKLHNGGETSDTSGSVKKQVSSHNMSHTNFPAYMDFFGYPEAGQSMPYWPEYEKMKTKEPFFPPHMASGLYGPFNPLVPPTFGEVVDMPWVQGSTQNLPNIAPDDSISVTISPADMDKLLENFEQFKQFDTVDDHSDHHYTSKGSSMNQASKKWTKKIQDDWKILQNDLPGRFSLFFSSILNILYVLVKIRVYESRMDLMRAVIIGAQGTPYHDGLFFFDIFFPTRYPDLPPQVYYHSKGLRLNPNLYNCGKVCLSLLNTWRGSGNENWVPGMSTMLQVLVSIQGLILNTKPYFNEPGYAYQSGSEAGENRSQQYNEETYILSIRTMLFNIRRPPKHFEDFVRGHFYKRAHDILVACKAYINGAQVGSLVEGGVQDLELSDKSCSDNFKQSVTHLLSQLVEAFKGIGVNDCDKYLQLLPTPVSNARKRSGRHSKAQLK 1383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21111087 21135969 - Lsi04G013340.1 Lsi04g01334 661383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01334 1383 SUPERFAMILY UBC-like 1083 1281 IPR016135 -
Lsi04g01334 1383 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1098 1273 IPR000608 -
Lsi04g01334 1383 MobiDBLite consensus disorder prediction 935 962 - -
Lsi04g01334 1383 Pfam Protein of unknown function (DUF616) 282 593 IPR006852 -
Lsi04g01334 1383 Gene3D Ubiquitin Conjugating Enzyme 1060 1355 IPR016135 -
Lsi04g01334 1383 SMART ubc_7 1101 1273 - -
Lsi04g01334 1383 Pfam Ubiquitin-conjugating enzyme 1138 1263 IPR000608 -
Lsi04g01334 1383 MobiDBLite consensus disorder prediction 639 673 - -
Lsi04g01334 1383 CDD UBCc 1100 1262 IPR000608 -
Lsi04g01334 1383 PANTHER ALKALINE CERAMIDASE-RELATED 74 663 IPR006852 -
Lsi04g01334 1383 PANTHER DUF616 FAMILY PROTEIN 74 663 - -
Lsi04g01334 1383 MobiDBLite consensus disorder prediction 934 962 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01334 - - K10581 csv:101219881 1115.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00150 Lsi-Chr1:1540930 Lsi04g01334 Lsi-Chr4:21111087 1.28E-51 dispersed
Lsi03g00463 Lsi-Chr3:5240163 Lsi04g01334 Lsi-Chr4:21111087 3.48E-74 dispersed
Lsi04g01334 Lsi-Chr4:21111087 Lsi08g00093 Lsi-Chr8:1896262 1.98E-73 dispersed
Lsi01g00318 Lsi-Chr1:2796748 Lsi04g01334 Lsi-Chr4:21111087 2.91E-84 transposed
Lsi04g01634 Lsi-Chr4:23826626 Lsi04g01334 Lsi-Chr4:21111087 5.17E-58 transposed
Lsi09g01499 Lsi-Chr9:23009989 Lsi04g01334 Lsi-Chr4:21111087 4.74E-73 transposed
Lsi10g00504 Lsi-Chr10:7184770 Lsi04g01334 Lsi-Chr4:21111087 2.98E-81 transposed
Lsi11g01003 Lsi-Chr11:16955375 Lsi04g01334 Lsi-Chr4:21111087 0 transposed
Lsi02g00753 Lsi-Chr2:6913897 Lsi04g01334 Lsi-Chr4:21111087 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g223 . . . . . . Bma10g00499 Bma13g00955 . . . Cma09g00866 . Car09g00779 . Cpe06g00689 . Bhi09g03417 . . . . . . Cla11g01763 . Cec11g1850 Cco11g1857 Clacu11g1990 Cmu11g1799 . Cone6ag0145 Cone9ag0170 Cone14ag1064 . Lsi04g01334 Csa04g02345 Chy07g00077 . . . Bda05g00771 . . Bpe03g00837 . . . . Cmo09g00855 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004169 0 6 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 0 1 1 1 1 1 1 1 5 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01334 Lsi_Chr04 FPKM 20.120371 21.877356 15.554811 14.840609 5.910555 5.328704 9.032987 25.955444 32.743919 24.977064