Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01336 ATGTCGGACGAGGAGCACCACTTCGAATCTAAGGCCGACGCCGGAGCCTCCAAGACCTACCCACAACAGGCCGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGCAAGCACGGGCATGCTAAGTGTCACTTTGTTGGAATCGACATCTTCACTGCTAAGAAGCTCGAAGATATTGTTCCTTCATCCCATAATTGTGATGTGCCCCATGTGAATCGTACTGATTATCAGCTGATTGATATCTCCGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGTAACACCAAGGATGACTTGAGGCTTCCAACTGATGATAGCCTGCTCACTCAGATTAAGGATGGGTTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATCGGCCCGAAGAATTAG 483 48.45 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21151148 21153783 + Lsi04G013360.1 Lsi04g01336 661385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01336 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lsi04g01336 160 CDD S1_eIF5A 86 156 - -
Lsi04g01336 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Lsi04g01336 160 Gene3D - 86 159 IPR012340 -
Lsi04g01336 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Lsi04g01336 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lsi04g01336 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lsi04g01336 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lsi04g01336 160 MobiDBLite consensus disorder prediction 1 21 - -
Lsi04g01336 160 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lsi04g01336 160 Gene3D - 1 85 IPR014722 -
Lsi04g01336 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Lsi04g01336 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01336 Lsi08g01248 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00385 Lsi-Chr4:3796536 Lsi04g01336 Lsi-Chr4:21151148 1.50E-113 dispersed
Lsi04g01336 Lsi-Chr4:21151148 Lsi06g01156 Lsi-Chr6:21755679 1.00E-105 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01336 K03263 K02180 fve:101296375 323.553