Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g01336 | ATGTCGGACGAGGAGCACCACTTCGAATCTAAGGCCGACGCCGGAGCCTCCAAGACCTACCCACAACAGGCCGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGCAAGCACGGGCATGCTAAGTGTCACTTTGTTGGAATCGACATCTTCACTGCTAAGAAGCTCGAAGATATTGTTCCTTCATCCCATAATTGTGATGTGCCCCATGTGAATCGTACTGATTATCAGCTGATTGATATCTCCGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGTAACACCAAGGATGACTTGAGGCTTCCAACTGATGATAGCCTGCTCACTCAGATTAAGGATGGGTTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATCGGCCCGAAGAATTAG | 483 | 48.45 | MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN | 160 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 21151148 | 21153783 | + | Lsi04G013360.1 | Lsi04g01336 | 661385 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g01336 | 160 | SMART | eIF_5a_2 | 85 | 154 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Lsi04g01336 | 160 | CDD | S1_eIF5A | 86 | 156 | - | - | |
Lsi04g01336 | 160 | PANTHER | BNAA07G09420D PROTEIN | 1 | 156 | - | - | |
Lsi04g01336 | 160 | Gene3D | - | 86 | 159 | IPR012340 | - | |
Lsi04g01336 | 160 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 156 | IPR012340 | - | |
Lsi04g01336 | 160 | PIRSF | Transl_init_eIF5A | 1 | 157 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Lsi04g01336 | 160 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 156 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Lsi04g01336 | 160 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 154 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Lsi04g01336 | 160 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Lsi04g01336 | 160 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 17 | 153 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Lsi04g01336 | 160 | Gene3D | - | 1 | 85 | IPR014722 | - | |
Lsi04g01336 | 160 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 93 | IPR008991 | - | |
Lsi04g01336 | 160 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi04g01336 | Lsi08g01248 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g00385 | Lsi-Chr4:3796536 | Lsi04g01336 | Lsi-Chr4:21151148 | 1.50E-113 | dispersed | |
Lsi04g01336 | Lsi-Chr4:21151148 | Lsi06g01156 | Lsi-Chr6:21755679 | 1.00E-105 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g01336 | K03263 | K02180 | fve:101296375 | 323.553 |