Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01337 ATGGCGGATGTTAATTGTAACCCCAATTCGGCTTCAGATACATTGACACTTGATGGGATTAGAGATTCTTTGATCAGACAGGAGGATTCTATTGTTTTTAGTCTCATTGAGAGAGCTAGGTTCCCTCTCAATGGGAAGATGTACCATCATAACCATGCTTCAATTCCTGGATTTTCTGGTTCTTTGGTTGAGTTCATTGCTGGTAGATATGAGAATCCTGAAGAACATCCGTTCTTCCCTGAAAGTTTGCCCCGTCCTTTGGTGCACCCTCACAAGTATCCAAAGGTTTTGCATCCTTCAGGCGCTTCAATTAATATGAACAAAGCCATATGGGATTTCTACTTCAACAAATTCTTACCATTGTTGGTTGCCGATGGTGACAATGGAAATTACGCAGCCACTGCTGCTAGTGATCTTGCTTGTTTGCAGGTTCTTCGTGATAGTACAACCATGTCGATTTCTTGTACGAAACGTCTTTTTATCTACGATAACTCACATTATTTCTTAAACATGTATAACGACTTGACCAAATCTCAGGCGCTTTCAAGGAGGATTCACTGTGGAAAATACGTGGCTGAGGTGAAATTTAGGGATGCCCCTAATGAATACGAGACTCCGATTCGTTCTCAGGAAAGAGATACTTTGATGAAGCTATTGACATTTGAGGCAGTGGAAGAGATGGTGAAGAAGAGAGTAGAGAAGAAGGCTATGGTGTTTGGGCAAGAAGTGACCCTCAACAACACTAATGGAGAAGAAAATTATAAGATCGATCCATCCCTTGCGTCTCGCCTTTATGACGAATGGGTAATGCCACTTACAAAGGAAGTCGAAGTCGAATACCTTCTACGACGCCTCGAATGA 861 42.04 MADVNCNPNSASDTLTLDGIRDSLIRQEDSIVFSLIERARFPLNGKMYHHNHASIPGFSGSLVEFIAGRYENPEEHPFFPESLPRPLVHPHKYPKVLHPSGASINMNKAIWDFYFNKFLPLLVADGDNGNYAATAASDLACLQVLRDSTTMSISCTKRLFIYDNSHYFLNMYNDLTKSQALSRRIHCGKYVAEVKFRDAPNEYETPIRSQERDTLMKLLTFEAVEEMVKKRVEKKAMVFGQEVTLNNTNGEENYKIDPSLASRLYDEWVMPLTKEVEVEYLLRRLE 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21157924 21160397 + Lsi04G013370.1 Lsi04g01337 661386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01337 286 PANTHER CHORISMATE MUTASE 10 286 IPR008238 GO:0004106|GO:0009073
Lsi04g01337 286 PIRSF Chor_mut_AroQ_eu 151 286 IPR008238 GO:0004106|GO:0009073
Lsi04g01337 286 PIRSF Chor_mut_AroQ_eu 4 153 IPR008238 GO:0004106|GO:0009073
Lsi04g01337 286 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 10 153 IPR037039 GO:0004106|GO:0009073
Lsi04g01337 286 SUPERFAMILY Chorismate mutase II 166 286 IPR036263 GO:0046417
Lsi04g01337 286 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 154 286 IPR037039 GO:0004106|GO:0009073
Lsi04g01337 286 SUPERFAMILY Chorismate mutase II 10 145 IPR036263 GO:0046417
Lsi04g01337 286 ProSiteProfiles Chorismate mutase domain profile. 8 286 IPR008238 GO:0004106|GO:0009073
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01337 K01850 E5.4.99.5; chorismate mutase [EC:5.4.99.5] - csv:101213051 413.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01523 Lsi-Chr3:26237703 Lsi04g01337 Lsi-Chr4:21157924 2.46E-89 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g575 Blo01g01418 . Bda01g00662 . . Bpe02g00535 . . . . Cma01g01666 . Car09g00360 . . . Cpe06g00295 . . . . . . . Cla05g01680 Cam05g1795 Cec05g1804 Cco05g1862 Clacu05g1782 Cmu05g1667 Cre05g1797 Cone4ag1747 Cone7ag1666 . . Lsi04g01337 . . . . . . . . . . . Sed05g1745 Cmo01g01715 Cmo09g00415 Cma09g00410 . Car01g01280 . . Cpe02g00324 Bhi09g03009 Tan01g3563 Cmetu07g2151 . . . . . . . . . . . . . . Cme07g00121
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008493 1 2 0 0 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 3 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01337 Lsi_Chr04 FPKM 1.964377 2.865737 0.449011 0.525021 4.131296 4.41087 4.342494 0.253113 0.325877 0.22449