Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01346 ATGCCCGCGCTTACAAGCTCCGGTCGGCGCGCAAATAGTTTTTCGCTTCATCGGTCGACGGACAAAGCCATGGCTCGGCGCCATAGCCAAGCTCACCCGTCCAGTTGGAACCGTGTGCTACATTGTGGGCTGGCCATGAGAAAGAACGACAAAGAGAATAGGTACGAAAACGAGAAAGAAATTGACCGATTGAGACTGACATTAGCCTCCTGGTTGAACAAGAAAATTGATATGGGTATATACCTCAGCAATCCCAAAACAGAGAAGTCCTCCGAAGACGGTGAGAATAGATGGCTTAGATATGGACTATCGTCCATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCAGTTCCTAATCTGGATGCCTGCACTTCTTTCTTTGGTGTTTATGATGGCCATGGAGGTAAGGTGGTTGCAAAGTTCTGTGCCAAGTACCTACATCAGCAAGTGAAGAAAAATGAAACTTTTGCTGCTGGAGATATAGGAACTTCTGTGCAGAAAGCATTCTACAGAATGGATGAAATGATGCGTGGACAAAGAGGTTGGAGAGAATTAGCTGTTTTGGGTGATAGATTGAACAAGTTCACTGGCATGATAGAAGGGTTAATCTGGTCCCCTAAAAGCAGTGATGCAAATGACCTGACTGATGATTGGGCTTTTGAGGAGGGTCCGCACTCTGACTTTACTGGCCCAACGTCCGGGTGTACAGCTTGTGTTGCAATTATTAGAAATAACAAACTTGTTGTTGCAAATGCTGGCGATTCTCGCTGTGTGCTATCAAGAAAGGGCCAGGCCCTCAGTCTCTCTAGAGATCACAAGCCTGATCTTGAGGCTGAGAAGGATAGAATTCTGAAAGCTGGTGGTTTTATTCATGCTGGACGAGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGTGACATGGAATTTAAGCAGAATAAATTTTTACCTGTTGAAAAGCAAATTATTACTGCAAATCCTGATGTAACCACTGTCGAGCTTTGCGACGACGATGAGTTTATTGTGATAGCTTGTGATGGTATATGGGATTGCATGTCTAACCAGCAACTGGTAGATTTTATACATGAACAGCTAAAATCAGAAAGCAAACTCTCTGTGGTTGTTGAGAGAGTACTTGATAGGTGTTTGGCACCTTCCACAGCTGGTGGCGAGGGATGTGATAACATGACCATGATTTTGGTGCAGTTTAAGAAAGATATTCAATCAAACTCCTCTCTGGATGACCAAACTTCACCTGCCGCCACCGCCCATGCCGAACCAAACAGTACTGAATCAGTGCAGGAAGATGAATTGAGCCAGAGACTTTGA 1338 45.14 MPALTSSGRRANSFSLHRSTDKAMARRHSQAHPSSWNRVLHCGLAMRKNDKENRYENEKEIDRLRLTLASWLNKKIDMGIYLSNPKTEKSSEDGENRWLRYGLSSMQGWRATMEDAHAAVPNLDACTSFFGVYDGHGGKVVAKFCAKYLHQQVKKNETFAAGDIGTSVQKAFYRMDEMMRGQRGWRELAVLGDRLNKFTGMIEGLIWSPKSSDANDLTDDWAFEEGPHSDFTGPTSGCTACVAIIRNNKLVVANAGDSRCVLSRKGQALSLSRDHKPDLEAEKDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPVEKQIITANPDVTTVELCDDDEFIVIACDGIWDCMSNQQLVDFIHEQLKSESKLSVVVERVLDRCLAPSTAGGEGCDNMTMILVQFKKDIQSNSSLDDQTSPAATAHAEPNSTESVQEDELSQRL 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21213825 21222396 - Lsi04G013460.1 Lsi04g01346 661395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01346 445 SUPERFAMILY PP2C-like 80 407 IPR036457 -
Lsi04g01346 445 CDD PP2Cc 100 406 IPR001932 -
Lsi04g01346 445 MobiDBLite consensus disorder prediction 413 438 - -
Lsi04g01346 445 Pfam Protein phosphatase 2C 218 390 IPR001932 -
Lsi04g01346 445 Pfam Protein phosphatase 2C 100 180 IPR001932 -
Lsi04g01346 445 ProSiteProfiles PPM-type phosphatase domain profile. 100 406 IPR001932 -
Lsi04g01346 445 PANTHER PROTEIN PHOSPHATASE 2C 75 419 IPR015655 GO:0004722|GO:0006470
Lsi04g01346 445 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
Lsi04g01346 445 Gene3D - 77 407 IPR036457 -
Lsi04g01346 445 SMART PP2C_SIG_2 105 406 IPR001932 -
Lsi04g01346 445 MobiDBLite consensus disorder prediction 1 19 - -
Lsi04g01346 445 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 75 419 - -
Lsi04g01346 445 MobiDBLite consensus disorder prediction 413 445 - -
Lsi04g01346 445 SMART PP2C_4 90 404 IPR001932 -
Lsi04g01346 445 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02662 Lsi-Chr2:33098364 Lsi04g01346 Lsi-Chr4:21213825 0 dispersed
Lsi04g01346 Lsi-Chr4:21213825 Lsi11g00389 Lsi-Chr11:4007795 1.03E-35 dispersed
Lsi04g01346 Lsi-Chr4:21213825 Lsi03g00358 Lsi-Chr3:4227142 1.67E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01346 K17499 - csv:101211604 678.322