Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g01346 | ATGCCCGCGCTTACAAGCTCCGGTCGGCGCGCAAATAGTTTTTCGCTTCATCGGTCGACGGACAAAGCCATGGCTCGGCGCCATAGCCAAGCTCACCCGTCCAGTTGGAACCGTGTGCTACATTGTGGGCTGGCCATGAGAAAGAACGACAAAGAGAATAGGTACGAAAACGAGAAAGAAATTGACCGATTGAGACTGACATTAGCCTCCTGGTTGAACAAGAAAATTGATATGGGTATATACCTCAGCAATCCCAAAACAGAGAAGTCCTCCGAAGACGGTGAGAATAGATGGCTTAGATATGGACTATCGTCCATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCAGTTCCTAATCTGGATGCCTGCACTTCTTTCTTTGGTGTTTATGATGGCCATGGAGGTAAGGTGGTTGCAAAGTTCTGTGCCAAGTACCTACATCAGCAAGTGAAGAAAAATGAAACTTTTGCTGCTGGAGATATAGGAACTTCTGTGCAGAAAGCATTCTACAGAATGGATGAAATGATGCGTGGACAAAGAGGTTGGAGAGAATTAGCTGTTTTGGGTGATAGATTGAACAAGTTCACTGGCATGATAGAAGGGTTAATCTGGTCCCCTAAAAGCAGTGATGCAAATGACCTGACTGATGATTGGGCTTTTGAGGAGGGTCCGCACTCTGACTTTACTGGCCCAACGTCCGGGTGTACAGCTTGTGTTGCAATTATTAGAAATAACAAACTTGTTGTTGCAAATGCTGGCGATTCTCGCTGTGTGCTATCAAGAAAGGGCCAGGCCCTCAGTCTCTCTAGAGATCACAAGCCTGATCTTGAGGCTGAGAAGGATAGAATTCTGAAAGCTGGTGGTTTTATTCATGCTGGACGAGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGTGACATGGAATTTAAGCAGAATAAATTTTTACCTGTTGAAAAGCAAATTATTACTGCAAATCCTGATGTAACCACTGTCGAGCTTTGCGACGACGATGAGTTTATTGTGATAGCTTGTGATGGTATATGGGATTGCATGTCTAACCAGCAACTGGTAGATTTTATACATGAACAGCTAAAATCAGAAAGCAAACTCTCTGTGGTTGTTGAGAGAGTACTTGATAGGTGTTTGGCACCTTCCACAGCTGGTGGCGAGGGATGTGATAACATGACCATGATTTTGGTGCAGTTTAAGAAAGATATTCAATCAAACTCCTCTCTGGATGACCAAACTTCACCTGCCGCCACCGCCCATGCCGAACCAAACAGTACTGAATCAGTGCAGGAAGATGAATTGAGCCAGAGACTTTGA | 1338 | 45.14 | MPALTSSGRRANSFSLHRSTDKAMARRHSQAHPSSWNRVLHCGLAMRKNDKENRYENEKEIDRLRLTLASWLNKKIDMGIYLSNPKTEKSSEDGENRWLRYGLSSMQGWRATMEDAHAAVPNLDACTSFFGVYDGHGGKVVAKFCAKYLHQQVKKNETFAAGDIGTSVQKAFYRMDEMMRGQRGWRELAVLGDRLNKFTGMIEGLIWSPKSSDANDLTDDWAFEEGPHSDFTGPTSGCTACVAIIRNNKLVVANAGDSRCVLSRKGQALSLSRDHKPDLEAEKDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPVEKQIITANPDVTTVELCDDDEFIVIACDGIWDCMSNQQLVDFIHEQLKSESKLSVVVERVLDRCLAPSTAGGEGCDNMTMILVQFKKDIQSNSSLDDQTSPAATAHAEPNSTESVQEDELSQRL | 445 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 21213825 | 21222396 | - | Lsi04G013460.1 | Lsi04g01346 | 661395 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g01346 | 445 | SUPERFAMILY | PP2C-like | 80 | 407 | IPR036457 | - | |
Lsi04g01346 | 445 | CDD | PP2Cc | 100 | 406 | IPR001932 | - | |
Lsi04g01346 | 445 | MobiDBLite | consensus disorder prediction | 413 | 438 | - | - | |
Lsi04g01346 | 445 | Pfam | Protein phosphatase 2C | 218 | 390 | IPR001932 | - | |
Lsi04g01346 | 445 | Pfam | Protein phosphatase 2C | 100 | 180 | IPR001932 | - | |
Lsi04g01346 | 445 | ProSiteProfiles | PPM-type phosphatase domain profile. | 100 | 406 | IPR001932 | - | |
Lsi04g01346 | 445 | PANTHER | PROTEIN PHOSPHATASE 2C | 75 | 419 | IPR015655 | GO:0004722|GO:0006470 | |
Lsi04g01346 | 445 | ProSitePatterns | PPM-type phosphatase domain signature. | 129 | 137 | IPR000222 | GO:0043169 | |
Lsi04g01346 | 445 | Gene3D | - | 77 | 407 | IPR036457 | - | |
Lsi04g01346 | 445 | SMART | PP2C_SIG_2 | 105 | 406 | IPR001932 | - | |
Lsi04g01346 | 445 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Lsi04g01346 | 445 | PANTHER | PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED | 75 | 419 | - | - | |
Lsi04g01346 | 445 | MobiDBLite | consensus disorder prediction | 413 | 445 | - | - | |
Lsi04g01346 | 445 | SMART | PP2C_4 | 90 | 404 | IPR001932 | - | |
Lsi04g01346 | 445 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02662 | Lsi-Chr2:33098364 | Lsi04g01346 | Lsi-Chr4:21213825 | 0 | dispersed | |
Lsi04g01346 | Lsi-Chr4:21213825 | Lsi11g00389 | Lsi-Chr11:4007795 | 1.03E-35 | dispersed | |
Lsi04g01346 | Lsi-Chr4:21213825 | Lsi03g00358 | Lsi-Chr3:4227142 | 1.67E-28 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g01346 | K17499 | - | csv:101211604 | 678.322 |