Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01347 ATGCAGGCAGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGCGGTGGCCTTCGTGGAAGCAGATTTGTTACACCTCGCTTCGATTCCTCCTCCGCCGACTCTTCATCGCTTCGTCCACATGGCGGCGTTGCTTCAATCCTCAAGACTGGCGATTCACGGTTTGAAGGTCGTGAGCGAATCCAATACACTCGAGACCAGCTTCTGCAGCTTAGGGAGGTTGCAACAGTCCCTGAGGATATCTTGAAAGTCAAACTAGAAGTTGAGTCTGAGATAGTTGGGGAGGATCAAACATGGGCCCGTGCTGAAAGCAATCAGCAATCACAATCTCAAAGCCGTTACTTTGAGCCAGACAATCGAGATTGGCGTGGTCGATCCGGACAGTTACCCGGCTCCACAGAGGAAGGATCTTGGGAGGCAAATAAGGATTTGTCTGGACAATCTGAGTTGAGGTTCCAAGACTCAAATAATAGGAATCATGTTTCTGAAGTAGGAGAGATCAATTTGTTACTATGTATATCCATTCTCGTAATGGTCTATCTCTTTTTGGATATTAGACGTGAAGGTGTTTTATGGGATCCTTCATCTATTCCATTCACGGAATTTTTGAATGAGCCCCTTTCTCCATTGATGTATATCTGCTGGCTCTGGCATCGTTCTTATTTTCTGTGCAAACAGGTCGGCACCGCAGCTGCTCTTATCAAGGCTGAAGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGAAAAGGAACGAGTTTTGAAGACAGTTAAAGGTATACTGAATAAATTGACTCCAGAAAAGTTTGACATACTCAAAGGTCAACTGATTGACTCAGGAATTACATCCGCGGATATTTTGAAGGTTCCTACTATTGTGCCAAGTGATGTTATATCGCTTATATTTGAGAAGGCTGTGTATGAGCCCACATTTTGCCCTATGTACGCACTTTTGTGCTCTGACCTTAACGAGAAGCTTCCTTCATTTTCATCCGATGTGCCTGGAGAGAAAGATATCACTTTTAAACGAGTTCTCTTAAATATTTGCCAAGAGGCATTTGAAGGTGCTGATAACCTGAGGGCAGAAATCAGGCAGATGACTAGTCCTGAGCAGGAAATGGAAAGAAGAGATAAAGAAAGAATGGTTAAGCTTCGAACTCTAGGAAACATTCGCCTGATAGGTGAGCTTCTAAAACAGAAGATGGTGCCTGAAAAGATTGTTCACCATATTGTTCTGGAGCTGTTGGGGCCTGACCCTAAAATATGCCCTGCTGAGGAGAATGTTGAGGCTATTAGTCAGTTTTTTAACACAATAGGTAAGCAACTGGATGAGAGCCCAAAATCTCGACGGGTCAATGATATATATTTCAGCCGGTTGAAGGAGCTCACTGCAAACACCCAACTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTACGGGCTAATAACTGGGTTCCTAGACGTGAAGAGCTCCCAGTAATGAAAGACTCCATTATATTCGTTCTTGGAGATCTTGTTAAAGCAAAAACCATCACTGAAATTCATTCAGAGGCTGAAAAGAATCTAGGGCTCCGTCCAGGTTCAATTGCAATGATGAGAAATGGCCGTAATGCTGAGGCACATGGGGGATTAAGTCCTGGTGGTTTTCCTGTTTCCCGACCTGGCTTTGGAGGTATGATGCCTGGAATGCCTGGAGCCAGGAAAATGCCTGGTATGCCTGGACTTGAGTCGGACAATTGGGAAGTTCCTAGATCCCGAGCAATGCCAAGGGGTGAAAGTGGAGGTCCTACTGCCCGCGTCCAGTCATCACTAACAGGCAAAACACCTTCCATTAATTCAAAATATTTACCTCAGGGAAGTGGTGGTGTAATAACAGGGAGAACAAGTGCCTTGCTACAGGGTAGTGCTGCTGCATCTCCTGTTCGACCACCGAGTTCCATGCTCACAACCCAGCCTGTTGCTCACAACCCTAAACTGGTTGCTCCAGTCGCACCCGTCATATCTTCTCCTCCAAAGCCTGCAGCTTCTGCTGCATCCAATTTAGATGATCTTCACAAGAAAACCGTTTCGCTGCTCGAGGAATACTTCAGTGTACGGATTCTTGATGAAGCTCTACAGTGTGTAGAGGAGCTGAAATCCCCAGCTTATCACCCTGAGGTTGTTAAAGAAGCCCTTGCCATCGCACTTGAAAAGATTCCACCATGTGTAGACCCAGTTGTTAAGCTTCTTGAGCACTTGTTTCACAAGAATGTCTTGACTGCAAAGGATATAGGTACCGGGTGCCTTCTATACGGGTCACTGATGGATGATATTGGCATCGATCTGCCAAAAGCGCCAAACAATTTCGGTGAAATTCTCGGGAGGTTAATTTTGATCGGGGGTCTGGATTTCATGGTTGTGAAGGAGATTCTTAAGGAGCTGGAAGATAACTACTACCAGAAATCCATTTTTGGTGGTGTTATGAAGATCCTCAACTCTAGCCCTTCTGGAGAAGGAATTCTGGCAACTCAAAGCGTTGAGATCCAGGCATGTGAGACTTTACTTGCGTGA 2559 45.29 MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVASILKTGDSRFEGRERIQYTRDQLLQLREVATVPEDILKVKLEVESEIVGEDQTWARAESNQQSQSQSRYFEPDNRDWRGRSGQLPGSTEEGSWEANKDLSGQSELRFQDSNNRNHVSEVGEINLLLCISILVMVYLFLDIRREGVLWDPSSIPFTEFLNEPLSPLMYICWLWHRSYFLCKQVGTAAALIKAEVPWSVRRGNISEKERVLKTVKGILNKLTPEKFDILKGQLIDSGITSADILKVPTIVPSDVISLIFEKAVYEPTFCPMYALLCSDLNEKLPSFSSDVPGEKDITFKRVLLNICQEAFEGADNLRAEIRQMTSPEQEMERRDKERMVKLRTLGNIRLIGELLKQKMVPEKIVHHIVLELLGPDPKICPAEENVEAISQFFNTIGKQLDESPKSRRVNDIYFSRLKELTANTQLAPRLRFMVRDVLDLRANNWVPRREELPVMKDSIIFVLGDLVKAKTITEIHSEAEKNLGLRPGSIAMMRNGRNAEAHGGLSPGGFPVSRPGFGGMMPGMPGARKMPGMPGLESDNWEVPRSRAMPRGESGGPTARVQSSLTGKTPSINSKYLPQGSGGVITGRTSALLQGSAAASPVRPPSSMLTTQPVAHNPKLVAPVAPVISSPPKPAASAASNLDDLHKKTVSLLEEYFSVRILDEALQCVEELKSPAYHPEVVKEALAIALEKIPPCVDPVVKLLEHLFHKNVLTAKDIGTGCLLYGSLMDDIGIDLPKAPNNFGEILGRLILIGGLDFMVVKEILKELEDNYYQKSIFGGVMKILNSSPSGEGILATQSVEIQACETLLA 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21227360 21233949 - Lsi04G013470.1 Lsi04g01347 661396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01347 852 ProSiteProfiles MI domain profile. 686 808 IPR003891 -
Lsi04g01347 852 MobiDBLite consensus disorder prediction 25 39 - -
Lsi04g01347 852 Gene3D - 682 840 - -
Lsi04g01347 852 SMART if4_15 254 486 IPR003890 GO:0003723|GO:0005515
Lsi04g01347 852 Pfam MIF4G domain 254 486 IPR003890 GO:0003723|GO:0005515
Lsi04g01347 852 Pfam MA3 domain 688 798 IPR003891 -
Lsi04g01347 852 Gene3D - 245 487 - -
Lsi04g01347 852 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 225 851 - -
Lsi04g01347 852 SUPERFAMILY ARM repeat 682 838 IPR016024 -
Lsi04g01347 852 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 1 149 - -
Lsi04g01347 852 MobiDBLite consensus disorder prediction 99 115 - -
Lsi04g01347 852 MobiDBLite consensus disorder prediction 1 45 - -
Lsi04g01347 852 SMART ma3_7 687 799 IPR003891 -
Lsi04g01347 852 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1 149 IPR045208 GO:0003743
Lsi04g01347 852 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 225 851 IPR045208 GO:0003743
Lsi04g01347 852 MobiDBLite consensus disorder prediction 99 140 - -
Lsi04g01347 852 SUPERFAMILY ARM repeat 247 489 IPR016024 -
Lsi04g01347 852 MobiDBLite consensus disorder prediction 599 621 - -
Lsi04g01347 852 MobiDBLite consensus disorder prediction 590 621 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00460 Lsi-Chr2:3856909 Lsi04g01347 Lsi-Chr4:21227360 7.21E-06 dispersed
Lsi04g01347 Lsi-Chr4:21227360 Lsi06g01140 Lsi-Chr6:21674868 0 dispersed
Lsi04g01347 Lsi-Chr4:21227360 Lsi05g01884 Lsi-Chr5:26003859 2.52E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01347 K03260 - vvi:100250837 998.808