Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01349 ATGCGCCTTCTTCATAAACAGTCTGAAAATGGCCACGATTTGGCTGTCGATGTTGAGAGAGCTGAGCTTTATTGTTATGCTTGCTCCGATCAGGTTTACGACCCTGATTTTGATCGGACGGTGATGTCGAAGCACATCGTTGCTGCTGTACCGGAGAAATCGCAATCGCAATCGCAATCGGTGGAGAGTATTGGGGAGCGATCGAGTAAGAGAAGGAGATTGGGATCTGTAGATTTATTGGATTTGAAGAATTTGAAACCGTTGATTTCTGTTAAAGATCAGCGGTCGAAATCGTGCTATCCTTTGGGATTGAGGGGATTGAATAACTTGGGCAATACTTGTTTTATGAACTCTGTTCTTCAAGTGTTTCTTCATACTCCTCCTTTGAGCAATTACTTCTTGAATGATCAGCACAACCGTGAAACTTGCAGCAAAAGACCCATTGGGCAGCTCTGTTTGCCTTGTGACATTGATTGTATTTTTTCTGCTGTGTTTTCTGGTGATCATATGCCTTATAGTCCAGCTCAGTTTCTCTACAGGTCTGCCATTCACTCTGCAAATTTAGCATGTTATGAGCAGCAGGATGCCCATGAGTTCTTCATCTCAGTTTTAGATCGAATCCATGAGCGAGAACGGAAATCTAGGAGCCAAGATAAAGAGAATGGAGACTGCAAATGCATTGCTCACAAGGCTTTCTCTGGACAGTTGAGATCAGATGTCACATGTATGACATGTGGATTCACTTCAACAACTTATGATCCATGTGTGGACATTTCACTTGACTTGGACACCCAGGATTTCTCTTCTAGAAATATAGCTGGTAAGTCGGCGAAGCCAGCAGATTTCAGCAGTAAATCGACGCTATCTGGTTGTTTGGATCTTTTCACGAGACCGGAAAAGTTGGGACCCGACCAGAAACTTTTCTGCCAAAATTGTCAAGAAAAAAGAAATTCAGTGAAACAAATGTCTATCAGAAGGCTTCCATTGGTCTTGTGTTTGCATATCAAACGGTTTGAACATTCCTTTGTCAGGCGAACATCGAGAAAAATTGATCGGTATTTGCAGTTTCCTTTCTCCCTCGACATGATCCCTTATCTGTCATCATCTATTATCAGAAACAGATATGGGAATAGGATTTTTGCTTCTGAGGGGGATGAATTAGATGCTTCATCGAAGTTTGAGATTTTCGCTGTGGTTTCCCATTCGGGGACACTTGAGTCTGGCCACTATGTGACGTACTTGCGTTTGAGAAATCGATGGTATAAATGCGACGATGCGTGGATCACGGAAGTCGATGAAGAAATGAAAATAGCCAACCCCAAATCAAATGAGGATATGAGCTGCCTTCCTATTTCCCCGCGCAACGATGCATTCCAGCCAATTGCTGAAGAAGGGATGGGTAGCCAGACTATTCCAAGCCATGAACGCTCCAGAACATATTGGACACCAGTAATGGAACGTTACTTTATTGATCTTATGTTGGAGCAGCTTCACCGAGGAAACCGGAGTGGGCACACTTTCAACAAGCAGGCATGGACGGACATGCTTATGATGTTCAATACAAAATTTGGATCTCAGTATGATAAAGATGTATTGAAGAGTCGCTATACAAATTTGTGGAAGCAATTCAACGATGTAAAGAATCTATTAGGTCATAGTGGTTTTTCCTGGGACGAAGGTCGACAGATGGCCCATCCGGATGCACGATCCTATAAAACTAAAGCAGTACTGAATTTTACTGATTTATGCCTGATATATGGATACACTATTGCTGATGGAAGATACAGTCGATCAAGTCATGATATAGACTTTGATGATGAAGTCCAAGCTGTAAATACAGGCGACACCATCGGTTGCCCTGCACCTCCTGATCGTCCAAGAACAGATTGGACACTAGAAATGGACCAGTATTTCATTGCGCTTATGCTGGATCAAGTAGGAAGGGGCAATAAGACGTCTAATACATTCAATAAGCAAGCATGGACCGATATGCTTGCATTGTTTAATGCTAAATTTGGTCCTCAACATGGTAAAAGGGTGTTAAGACACCGATATAAGAAATTATGGAAGTACTATAGTGATATTATGAATCTACTTCAACAAAATGGATTTTGCTGGGATGAAGTACAGCAAATGGTGGTTGCTGCTGATGATATTTGGGATGCTTATGTTAAGACACACCCATTTGCACGAAGTTATAGAATGAAAGCCTTGCCAAACTACTATGACTTGGTTCTCATATATGGGAATGTAATTGATAATGAGAACCAGAATCATTTGCATCTAGATAAAAACATTCAAGACGACATATCAGAGGTAAAGGGTGGAGAATCAAATGAGAATCAAATGGCAACTGTCAGCGATCGTACAAGAACATATTGGACGCCCCCGATGGACCGTTACCTCATAGATTTGCTACTAGAACAGGTGCATAGGGGCAATAAAATAGGTCAAACATTTGTAAGTCATGCTTGGATTGTCATGGTTACTGCTTTCAATGCCCAATTCAGAGCTCACCATGACAAGGATGTGCTGAAAAATCGATACAAACATTTGAGACGGTTGTATAATGAAATAAAGATTCTTCTCGAACAGAGAGGATTTTCATGGGATGAAAATCGGGAAATTGTTACTGCTGACGATCATGTTTGGGATGCTTATACCAAGGATCACCCTGATTCGCGATCATATAGAGTCAAAACTGTACCAAGCTATCACAAGTTGTGTTTTATATTTGGTGAAGAAAGTTCTGACAGAAGATATAGCCGTTTGGCTCATGATACCGATCCAAGTAACGGAGTGCCTGTTCTGATGACTGATGAAAGGAAAAATGATCAAGTCCCTGCTGGACCTTTACCCATGATAGACTGGACACCACAGATGGATCGCTCTTTTATTGATCTTATGCTTGAACAATTGCAAGAAGGAAATACTTTTGGCCAAGCATTTAGCGAGCAAGCATGGACTCACATAATTATATCATTCAATGAGCGGTTCAAACTTCAATGTGACAGATATGTTCTAGAAGATCGTTATTTCTGGTGGATGAAGCAATACAGCAACATCTTCAATCTTCTCAATCACAGGGGGTTCGTGTGGAACGAATCTCAACAACTGATTACTGCTGAGGATGATCTCTGGGAAGCTTATGGAAAGGAACATCCAGATGCCCTCTTGTACAAAGACAAATTCCTAGGCTACTATTCTGATTTGTGCAAGATTTTTGGAAACGTTTTAGATAGAGTAGTCACTGGTCAGTGTACAGGTGAAACCGATAGCGAAAAGGTGGAGATAAAGATGGATGGAAATGAACACCTACTACTAACATCAAGAAAGCGTCCTGCGGAGATGATATCATTGGACACAGAGCTCTCCAAGAAAGTGCATAGAACCGAGAACGACGTACAGAAAGCTCTTTCCGAGATGGCAGGTGTAGTCACTAGATTGGTGAACATGAAACAGCACCATAATTATAAAGCAGTGGAAGGTGCCATTGATGCACTTCAAGCTATACCAGACATCGATGATGAACTTATGTTGGATGCTTGTGACCTCTTAGAAGATGAGAGGAAGGCAAAAACATTTGTGGCTTTGGATGCGACCCTGCGAAAGAAGTGGTTACTAAGAAAGCTTCGTTCGCAATAG 3645 41.62 MRLLHKQSENGHDLAVDVERAELYCYACSDQVYDPDFDRTVMSKHIVAAVPEKSQSQSQSVESIGERSSKRRRLGSVDLLDLKNLKPLISVKDQRSKSCYPLGLRGLNNLGNTCFMNSVLQVFLHTPPLSNYFLNDQHNRETCSKRPIGQLCLPCDIDCIFSAVFSGDHMPYSPAQFLYRSAIHSANLACYEQQDAHEFFISVLDRIHERERKSRSQDKENGDCKCIAHKAFSGQLRSDVTCMTCGFTSTTYDPCVDISLDLDTQDFSSRNIAGKSAKPADFSSKSTLSGCLDLFTRPEKLGPDQKLFCQNCQEKRNSVKQMSIRRLPLVLCLHIKRFEHSFVRRTSRKIDRYLQFPFSLDMIPYLSSSIIRNRYGNRIFASEGDELDASSKFEIFAVVSHSGTLESGHYVTYLRLRNRWYKCDDAWITEVDEEMKIANPKSNEDMSCLPISPRNDAFQPIAEEGMGSQTIPSHERSRTYWTPVMERYFIDLMLEQLHRGNRSGHTFNKQAWTDMLMMFNTKFGSQYDKDVLKSRYTNLWKQFNDVKNLLGHSGFSWDEGRQMAHPDARSYKTKAVLNFTDLCLIYGYTIADGRYSRSSHDIDFDDEVQAVNTGDTIGCPAPPDRPRTDWTLEMDQYFIALMLDQVGRGNKTSNTFNKQAWTDMLALFNAKFGPQHGKRVLRHRYKKLWKYYSDIMNLLQQNGFCWDEVQQMVVAADDIWDAYVKTHPFARSYRMKALPNYYDLVLIYGNVIDNENQNHLHLDKNIQDDISEVKGGESNENQMATVSDRTRTYWTPPMDRYLIDLLLEQVHRGNKIGQTFVSHAWIVMVTAFNAQFRAHHDKDVLKNRYKHLRRLYNEIKILLEQRGFSWDENREIVTADDHVWDAYTKDHPDSRSYRVKTVPSYHKLCFIFGEESSDRRYSRLAHDTDPSNGVPVLMTDERKNDQVPAGPLPMIDWTPQMDRSFIDLMLEQLQEGNTFGQAFSEQAWTHIIISFNERFKLQCDRYVLEDRYFWWMKQYSNIFNLLNHRGFVWNESQQLITAEDDLWEAYGKEHPDALLYKDKFLGYYSDLCKIFGNVLDRVVTGQCTGETDSEKVEIKMDGNEHLLLTSRKRPAEMISLDTELSKKVHRTENDVQKALSEMAGVVTRLVNMKQHHNYKAVEGAIDALQAIPDIDDELMLDACDLLEDERKAKTFVALDATLRKKWLLRKLRSQ 1214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21247051 21256042 - Lsi04G013490.1 Lsi04g01349 661398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01349 1214 Gene3D Cysteine proteinases 100 448 - -
Lsi04g01349 1214 PANTHER EXPRESSED PROTEIN 1100 1213 - -
Lsi04g01349 1214 Pfam Myb/SANT-like DNA-binding domain 480 564 IPR024752 -
Lsi04g01349 1214 Pfam Myb/SANT-like DNA-binding domain 793 887 IPR024752 -
Lsi04g01349 1214 Pfam Myb/SANT-like DNA-binding domain 630 723 IPR024752 -
Lsi04g01349 1214 Pfam Myb/SANT-like DNA-binding domain 957 1050 IPR024752 -
Lsi04g01349 1214 PANTHER EXPRESSED PROTEIN 774 933 - -
Lsi04g01349 1214 PANTHER EXPRESSED PROTEIN 466 615 - -
Lsi04g01349 1214 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 623 773 - -
Lsi04g01349 1214 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 955 1077 - -
Lsi04g01349 1214 Pfam Ubiquitin carboxyl-terminal hydrolase 106 438 IPR001394 GO:0004843|GO:0016579
Lsi04g01349 1214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 54 IPR013083 -
Lsi04g01349 1214 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 466 615 - -
Lsi04g01349 1214 SUPERFAMILY Cysteine proteinases 101 436 IPR038765 -
Lsi04g01349 1214 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 1100 1213 - -
Lsi04g01349 1214 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 774 933 - -
Lsi04g01349 1214 PANTHER EXPRESSED PROTEIN 623 773 - -
Lsi04g01349 1214 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 105 454 IPR028889 -
Lsi04g01349 1214 PANTHER EXPRESSED PROTEIN 955 1077 - -
Lsi04g01349 1214 ProSiteProfiles Zinc finger UBP-type profile. 1 57 IPR001607 GO:0008270
Lsi04g01349 1214 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 106 121 IPR018200 GO:0004843|GO:0006511
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01349 - - - csv:101212813 1426.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02439 Lsi-Chr2:30954292 Lsi04g01349 Lsi-Chr4:21247051 2.22E-68 dispersed
Lsi04g01275 Lsi-Chr4:20111837 Lsi04g01349 Lsi-Chr4:21247051 1.53E-07 dispersed
Lsi04g01349 Lsi-Chr4:21247051 Lsi11g00352 Lsi-Chr11:3698863 4.10E-159 dispersed
Lsi08g00620 Lsi-Chr8:14527578 Lsi04g01349 Lsi-Chr4:21247051 1.18E-09 dispersed
Lsi09g00494 Lsi-Chr9:5165951 Lsi04g01349 Lsi-Chr4:21247051 1.31E-08 dispersed
Lsi04g01349 Lsi-Chr4:21247051 Lsi08g01030 Lsi-Chr8:18894967 8.97E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g597 Blo01g01420 . Bda01g00659 . . Bpe02g00532 . . . . . . Car09g00347 . . . . . . . . . . . Cla05g01666 Cam05g1780 Cec05g1786 Cco05g1846 Clacu05g1769 Cmu05g1653 Cre05g1782 . Cone7ag1656 . . Lsi04g01349 Csa03g04488 Chy04g00212 . . . . . . . . . Sed13g1952 . Cmo09g00400 . . . . . . Bhi09g03035 Tan01g3536 Cmetu07g1151 . Hepe01g1951 Mch11g0488 . . . . . . . . . . . Cme07g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006000 1 7 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01349 Lsi_Chr04 FPKM 6.491416 6.852754 12.988962 12.501039 7.910287 4.858053 6.575471 22.614265 21.1859 21.971035