Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01350 ATGGAAAAGGGCAAAGGTTTGATGGTGGACGGCCGGCGATGGGCCGTCGATTTCTCCGACAATTCTTCGTCGAATTCGACTCGCGATATTCCTGATCCGCCCGGTTTCACTCGTGCTTCTCAAGATCAAGACGATTCCACTCTCAGCCGCCAAAAGAAGGATGCTGAATCCAATTGGAAGGCACAGAAAGCTTGGGAAGTGGCCCAGGCGCCTTTGAAGAATTTGTTCATGATGGGCTTCATGATGTGGATGGCTGGAAGCACTGTTCATTTATTTAGCATTGGTATCACATTTTCAGCTCTTTGGCAACCCATAAGCGCCCTGCAAGGCGTTGGAAAGGTCTTTGAGCCTTACAAGGACAGTAAAGTAGATCTTCTTGGACCTAAGTTGTTGTTTATTGCCCTTAACCTCGGAGGATTAGCATTAGGTGTTTGGAAGCTTAACACTTTGGGGCTTCTGCCAACTCATGTATCAGACTGGGTTTCGTCTCTACCACCTGCTCAGGAAGTCGAATTTTCGGGTGGTGGCATTTCTCTTCGCTAA 543 48.07 MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIPDPPGFTRASQDQDDSTLSRQKKDAESNWKAQKAWEVAQAPLKNLFMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQEVEFSGGGISLR 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21259333 21263075 - Lsi04G013500.1 Lsi04g01350 661399

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01350 180 Pfam Protein of unknown function (DUF1077) 52 164 IPR009445 -
Lsi04g01350 180 MobiDBLite consensus disorder prediction 17 57 - -
Lsi04g01350 180 MobiDBLite consensus disorder prediction 17 31 - -
Lsi04g01350 180 PIRSF UCP017207_Tmem85 1 178 IPR009445 -
Lsi04g01350 180 PANTHER ER MEMBRANE PROTEIN COMPLEX SUBUNIT 4 8 179 IPR009445 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01350 K23565 EMC4, TMEM85; ER membrane protein complex subunit 4 - csv:101210619 365.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g599 Blo01g01421 Blo12g01043 Bda01g00657 Bda03g00109 . Bpe02g00530 Bma04g00101 Bma01g02177 . . Cma01g01677 . Car09g00346 . . . Cpe06g00285 . . . . . . . Cla05g01665 Cam05g1779 Cec05g1785 Cco05g1845 Clacu05g1768 Cmu05g1652 Cre05g1781 Cone4ag1736 Cone7ag1655 Cone17ag0971 Cone20ag0313 Lsi04g01350 . . . . . . . . Bpe04g00093 . . Sed05g1760 Cmo01g01727 Cmo09g00399 Cma09g00398 . Car01g01292 . . Cpe02g00314 Bhi09g03037 Tan01g3535 Cmetu07g2294 . Hepe01g1950 Mch11g0486 . . . . . . . . . . . Cme07g00138
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005906 2 1 1 2 2 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01350 Lsi_Chr04 FPKM 6.221961 6.210554 10.180796 11.86495 8.152256 6.620861 7.947801 19.71077 16.290121 19.730389