Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01351 ATGGGCTGCAAGTATAAGTTTGGTTTGGGATTGATTTGTACGGCGGTTCTTATATGGGTTGCTTCCGCCGAGATTACTCAGTACTTCTCGAACTCGGCCCTGGCAAATACGAGCGTTGCAACTGCAACCATCTTGAATTCCACATCAGGCCTTTTTGCCCTTCTGTTTGGAGCTCTTGTTGGACAAGAATCCATAACCATTTCCAAGGTGGTTGCTGTTTTCATTAGTATGGCTGGGGTTATTATGACCACCCTGGGAAAAACTTGGGCAACTAATGAGTTCCTAATCATTTCTGAGTCGAGAGGGCGAACCATCACAGGGAATGTTTTCGGTCTTCTTTCGGCTGCAATCTATGGATTATTTACTGTGCTGCTCAAGAAATCAGCTGGATCAGAAGGAGACAAGATTGATGTACAAAAATTCTTTGGATATGTTGGTCTCTTTACCATATTGGTGTGGCCTTTAACTGCTGTGGGCATTGAACCTCCTCTCAAGTTTCCTCCCTCGAAATCCATCACCGAGATCGTGCTTTTGAATGGCTTCGTCGGGAGCGTCCTGTCGGATTACTTTTGGGCCCTCTCTGTGATTTGGACTTCTCCATTAGTTGCTACCCTAGGCATGTCATTGACAATTCCCCTTGCTATGCTGGCCGACGTGATATTGCACGGTCGGCGCTACTCTGCCCTCTACATCCTCGGTTGCGTTCAGACAAGTTATCTACCTAGAGCAACCAGCGACATTGACTGCAGAATAATCCTCCGAAGAAGAAGAGGGTGTACATAG 783 46.62 MGCKYKFGLGLICTAVLIWVASAEITQYFSNSALANTSVATATILNSTSGLFALLFGALVGQESITISKVVAVFISMAGVIMTTLGKTWATNEFLIISESRGRTITGNVFGLLSAAIYGLFTVLLKKSAGSEGDKIDVQKFFGYVGLFTILVWPLTAVGIEPPLKFPPSKSITEIVLLNGFVGSVLSDYFWALSVIWTSPLVATLGMSLTIPLAMLADVILHGRRYSALYILGCVQTSYLPRATSDIDCRIILRRRRGCT 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21265692 21270511 - Lsi04G013510.1 Lsi04g01351 661400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01351 260 PANTHER SOLUTE CARRIER FAMILY 35, MEMBER F5 1 27 - -
Lsi04g01351 260 SUPERFAMILY Multidrug resistance efflux transporter EmrE 16 87 - -
Lsi04g01351 260 PANTHER THIAMINE-REPRESSIBLE MITOCHONDRIAL TRANSPORT PROTEIN THI74-LIKE ISOFORM X1 25 237 - -
Lsi04g01351 260 PANTHER SOLUTE CARRIER FAMILY 35, MEMBER F5 25 237 - -
Lsi04g01351 260 Pfam EamA-like transporter family 17 84 IPR000620 GO:0016020|GO:0016021
Lsi04g01351 260 PANTHER THIAMINE-REPRESSIBLE MITOCHONDRIAL TRANSPORT PROTEIN THI74-LIKE ISOFORM X1 1 27 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01351 K15289 SLC35F5; solute carrier family 35, member F5 - csv:101212577 381.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01351 Lsi-Chr4:21265692 Lsi06g01017 Lsi-Chr6:20325342 2.89E-69 dispersed
Lsi04g01351 Lsi-Chr4:21265692 Lsi04g02113 Lsi-Chr4:28258100 7.54E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g600 . . . Bda03g00110 . . Bma04g00102 . . . Cma01g01678 . . . . . . . . . . . . . Cla05g01664 Cam05g1778 Cec05g1784 Cco05g1844 Clacu05g1767 Cmu05g1651 Cre05g1780 Cone4ag1735 Cone7ag1654 . . Lsi04g01351 . . . . . . . . Bpe04g00094 . . Sed05g1768 Cmo01g01570 . . . Car01g01293 . . Cpe02g00313 Bhi09g03038 Tan01g3534 Cmetu07g1577 . Hepe01g1949 Mch11g0485 . . . . . . . . . . . Cme07g00139
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011760 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01351 Lsi_Chr04 FPKM 4.90678 7.036761 8.250934 8.833202 9.720997 9.116961 9.186089 11.352509 12.270667 12.268427