Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01355 ATGGGGTTCGATCATCTTCATCAGCATCATCAAGCGGCCGATGGATTGACGAACTTGTTCACCAAGGCCAATCACGATCTCTCGGTGGTTCAGTACAGGCTCGAGAAGGAGTTTCAGCAAATATATCCTGAGAGCGCGAATCCAATGAAGTTAGTTTCAAGGATAAAGAAGATACGAGATGATATATCAACCTTGAAAGAGCAGTGCCGTGAAGTTTTGATGGCCAAACAGGATGTAATTGATAAGGCACGGACGGTTCTGGTTGGGAACAGAAACATGCTGCAAAAAATGCAAGCATCCATGGGCGTCCCCTTTGTGAGCGATCTCGATGATTCTGCATTTGTGCAATTCAAGCAGGTATTCATTGTTAATGTCCCTTGGTTTGCATTTTGTGGGGAAGATGGCCAAGAGGAAGCCGACTGTAATGACGTCAACAAGTTGCTATTCTCAGCCGTTGTGCAGGCATGA 468 45.73 MGFDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIRDDISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLQKMQASMGVPFVSDLDDSAFVQFKQVFIVNVPWFAFCGEDGQEEADCNDVNKLLFSAVVQA 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21292386 21297143 - Lsi04G013550.1 Lsi04g01355 661404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01355 155 Pfam Spindle and kinetochore-associated protein 2 10 117 IPR042091 -
Lsi04g01355 155 PANTHER SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 2 12 153 IPR026762 GO:0000940|GO:0005876|GO:0007059|GO:0008017|GO:0051301
Lsi04g01355 155 Gene3D - 10 120 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01355 K26095 SKA2; spindle and kinetochore-associated protein 2 - csv:101210123 250.366
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g606 . . . . . . Bma04g00103 . . . . . . . . . . . . . . . . . Cla05g01661 Cam05g1772 Cec05g1780 Cco05g1839 Clacu05g1762 Cmu05g1648 Cre05g1776 . . . . Lsi04g01355 . . . . . . . . Bpe04g00096 . . Sed13g1948 . . . . . . . . Bhi09g03042 Tan01g3530 Cmetu07g1663 . . . . . . . . . . . . . . Cme07g00143
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010813 0 2 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01355 Lsi_Chr04 FPKM 8.215088 9.389858 2.341441 1.722182 1.344147 1.401998 1.181287 0.854319 0.985679 1.001998