Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01356 ATGGCTTCGCTCCGCCCATTTCTTTCCACTGCCCCTTTCTCCTACGCGCCTAAGCCCACGAGCCTCACGAATTCTCTTCTTCTTCACGCTCCATCCTCTTCCTCGTTCAAATTAGTCGCCGGCAAAAGGAGATTCGCGGTGCGCACCCGCGCCGTCGCAGGCGCAGAAACTGCAGCTCAGATCGGCGATCTGAAGGACGATGATGGTCAGGTGGTTCTTTTCGGTCCGGCGATCGACGAGGAGCCTGGCGGTGAAGCTACGGCGGAGTACGATTGGACTGAAGAGTGGTACCCGTTGTACCTGACGCGGAATGTGCCGGAGGATGCTCCGTTGGGGCTCACCGTGTTCGATAAGCAGTTGGTTTTGTACCGCGATGGAACAGGCGAGCTCCGCTGTCACGAAGATAGGTGCCCACACAGAGAAGTCCCTTTAGTTAGTACAAGTGTTTATAGGAAGTATTTTCGATTAAAACTTCCATCAGATGCCAAGATTCCTAGATCCGCATGTCTAAGAACATACGAGGTAAGAGACTCACAGGGAGTTGTATGGGTGTGGATGTCTTTGGAAAAGCCTCCAACCCTAAAAAAGATACCACGGTTCGAGAACTTCGACCGGCCCGGGTTTCAGGACATTTCGAGTGTTCACGAGCTTCCTTATGATCACTCCATACTTCTTGAGAACCTTATGGATCCTGCACATATACCTATCTCCCACGATAGAACAGATTTTACAGCCAGAAGGGAAGATGCTCAGCCACTTGGATTCGAGATTACCGAGCGTACAAATCGCGGTTTCGCCGGTCGGTGGGGCCGTGCTAAAGATCAACCATTGCCAAACTTCTTAAGGTTTGAAGCACCTTGCGTCCTTCAGAATAACAGGGAAATGCCCAATGATAAAGGTGGGATGGATTACTTTACAGGACTTTTCCTTTGTAGACCTACAGGCCAGGGGAAATCCATGCTTATAGTGAGATTTGGTAGCACAAGATCATCTCTCTTGGTAAAATTGCTGCCTACATGGTTTATGCACCAAAATGCCTGCAAAGTTTTTGAGCAAGATATGGGATTTCTTTCATCCCAAAATGAGGTTCTAATGAGAGAAAAAGTACCTACAAAGGAACTCTATCTCAACTTACGATCGTCCGATACTTTTGTTCTCGAGTACCGACGATGGATGGACAAGGTTGGGAACGGGATGCCGTATTATTTTGGACACAGTACAATTTCGTTGCCGAAAGTGCCTGCCGTTGTCGAACACGCCCCGGTGGGACTAGTTGCTGGAGCTTCAGCTTCTCCTCCGGCTAAGGGGGGAATCGGAACTATGTATGCTCCAAACTTGTCGAATCGATACTTTCGACATATAATTCATTGCAGAAGTTGTAGCAATACCATCAAATCTTTTCAAACTTGGAACAAGGCTTTTTCTGCCATTGGCATCACATTGGTTGCATTGGCAATTTTGGTGAGTGGAAGGCAATGGAAGGCAGTCATTCTGTTGTCAGCAGCATTATGCTTTGGTGGAGCTTATGCATGCTCAGCTATTGTGGCTTTAAATACAACAAATTTCATAAGAACTCACAGAAGGTTGTAA 1590 47.74 MASLRPFLSTAPFSYAPKPTSLTNSLLLHAPSSSSFKLVAGKRRFAVRTRAVAGAETAAQIGDLKDDDGQVVLFGPAIDEEPGGEATAEYDWTEEWYPLYLTRNVPEDAPLGLTVFDKQLVLYRDGTGELRCHEDRCPHREVPLVSTSVYRKYFRLKLPSDAKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPRFENFDRPGFQDISSVHELPYDHSILLENLMDPAHIPISHDRTDFTARREDAQPLGFEITERTNRGFAGRWGRAKDQPLPNFLRFEAPCVLQNNREMPNDKGGMDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLVKLLPTWFMHQNACKVFEQDMGFLSSQNEVLMREKVPTKELYLNLRSSDTFVLEYRRWMDKVGNGMPYYFGHSTISLPKVPAVVEHAPVGLVAGASASPPAKGGIGTMYAPNLSNRYFRHIIHCRSCSNTIKSFQTWNKAFSAIGITLVALAILVSGRQWKAVILLSAALCFGGAYACSAIVALNTTNFIRTHRRL 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21297238 21300352 - Lsi04G013560.1 Lsi04g01356 661405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01356 529 Gene3D - 91 155 IPR036922 GO:0051537
Lsi04g01356 529 PANTHER PROTEIN TIC 55, CHLOROPLASTIC 65 529 - -
Lsi04g01356 529 SUPERFAMILY ISP domain 86 187 IPR036922 GO:0051537
Lsi04g01356 529 Pfam Pheophorbide a oxygenase 283 368 IPR013626 GO:0010277
Lsi04g01356 529 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 96 184 IPR017941 GO:0051537
Lsi04g01356 529 Pfam Rieske [2Fe-2S] domain 95 146 IPR017941 GO:0051537
Lsi04g01356 529 SUPERFAMILY Bet v1-like 180 398 - -
Lsi04g01356 529 Gene3D - 206 397 - -
Lsi04g01356 529 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 65 529 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01356 - - - csv:101212085 859.366
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01356 Lsi-Chr4:21297238 Lsi06g00405 Lsi-Chr6:4494093 2.39E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g610 Blo01g01424 Blo12g01041 Bda01g00654 . . Bpe02g00226 . Bma01g02181 . . . . Car09g00342 . . . Cpe06g00281 . . . . . . . Cla05g01660 Cam05g1771 Cec05g1779 Cco05g1838 Clacu05g1761 Cmu05g1647 Cre05g1775 Cone4ag1731 Cone7ag1650 . . Lsi04g01356 . . . . . . . . Bpe04g00097 . . Sed13g1947 . Cmo09g00395 Cma09g00393 . . . . . Bhi09g03043 Tan01g3529 Cmetu07g0445 . Hepe01g1944 Mch11g0480 . . . . . . . . . . . Cme07g00144
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009854 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01356 Lsi_Chr04 FPKM 25.589611 31.853674 16.128239 17.477051 15.997325 15.894287 17.988468 20.606632 18.292175 19.425241