Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01357 ATGGAGAAAACGGCGTCGTATAATGAGATATGCAAGTCGTTTTTAGTTCTGTTGGTTTTGTCTGTTATTCCGGCGTCGACGGTGGCATTGTCGTTCGGATTTTACGCTGCCACGTGTCCTGCGGCGGAGCTTATGGTCAGGAACACCGTCAGATCAGCTTCCTCCGTTGACCCCACCATCCCCGGCAAGCTCCTCCGGTTGCTCTTCCATGACTGTTTTGTTGAGGGGTGTGATGGTTCAGTATTGGTGGAAGGAAACGGAACGGAAAGAAGCGATCCAGCAAACAGATCGCTTGGAGGATTTGAAGTAATCGATTCAGCTAAGAGAGCTCTAGAAATTTTCTGTCCTGGAACTGTTTCCTGTGCCGACATTGTCGTTTTGGCCGCCAGAGATGCTGTTGAATTCACCGGTGGGCCCCTCGTCCAAGTCCCGACCGGCCGGAGAGACGGAAAGATATCGGCGGCGTCAAACGTCCGACCAAACATCGTCGATACAAGCTTTTCAGTCGACCAAATGATGAATCTCTTCTCATCAAAAGGGCTGTCGGCGGACGATCTCGTCATCCTCTCTGGGGCCCACACCATCGGAACCGCCCACTGCAGCGCCTTCAGCGACCGCTTCCGACGAAACTCAAACGGCCATCTGTCCCTCATCGACGCCTCTCTCGACGGCACTTACGCCGACGAGCTCATGCGCCGGTGCCCCGCCGGCGCCGCCACCGCCGCCACCGTCGAAAACGATCCTGCGACGGCGTTTGTCTTCGACAATCAGTACTACAAAAACATTCTGTCACACAAAGGGCTATTTCAGTCGGATTCCGTTCTGATCAGCGACGGCCGGACCAGGGCTCAGGTGGAGAGCTTTGCGACTGATCAGATTGGGTTTTTTGAAAACTGGGCTCAATCGTTCTTGAAACTTAGTAGTATTGGAGTTAAGAGTGGGGATGAAGGGGAAATTAGATTGTCTTGTTCTACTAATAATGTTTGA 987 52.68 MEKTASYNEICKSFLVLLVLSVIPASTVALSFGFYAATCPAAELMVRNTVRSASSVDPTIPGKLLRLLFHDCFVEGCDGSVLVEGNGTERSDPANRSLGGFEVIDSAKRALEIFCPGTVSCADIVVLAARDAVEFTGGPLVQVPTGRRDGKISAASNVRPNIVDTSFSVDQMMNLFSSKGLSADDLVILSGAHTIGTAHCSAFSDRFRRNSNGHLSLIDASLDGTYADELMRRCPAGAATAATVENDPATAFVFDNQYYKNILSHKGLFQSDSVLISDGRTRAQVESFATDQIGFFENWAQSFLKLSSIGVKSGDEGEIRLSCSTNNV 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21304352 21308234 + Lsi04G013570.1 Lsi04g01357 661406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01357 328 ProSiteProfiles Plant heme peroxidase family profile. 29 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 Gene3D - 33 327 - -
Lsi04g01357 328 PANTHER PEROXIDASE 18-RELATED 20 325 - -
Lsi04g01357 328 SUPERFAMILY Heme-dependent peroxidases 30 327 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 PANTHER PEROXIDASE 25-RELATED 20 325 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 Gene3D Peroxidase, domain 2 163 306 - -
Lsi04g01357 328 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 CDD secretory_peroxidase 30 324 IPR033905 GO:0004601|GO:0042744
Lsi04g01357 328 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi04g01357 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Lsi04g01357 328 Pfam Peroxidase 46 291 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01357 Lsi-Chr4:21304352 Lsi05g01275 Lsi-Chr5:20482664 1.69E-84 dispersed
Lsi02g00787 Lsi-Chr2:7263913 Lsi04g01357 Lsi-Chr4:21304352 6.23E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01357 K00430 K18328 csv:101211842 582.793