Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01358 ATGGCGTCCCTTTCTTTAATGCTTTTCTTTGCTTTTTCTTTCCTTTTCTTTCAATCTTTCGCCGGAAAAGTATCGCCGGACTCCGACCGCCTCACCGTCGAACTCGCCGGACTTCTCCCCTCCGCCTCCTGCACCCGCCGCTCCCCACAAGGTCTGAGAGAGCAGTCATCACTGGAGGTAATTCACCGGCATGGGCCATGCGGCGGTGGAGTTTCAAAAGCTCCGACGACCACTGAAATGTTGGTGCAAGATCAAGCTAGAGTGGATTTCATCAACTCAAAATTTTCAGGGGAGCTCAAATCAATTGACCGTTTAGGGCCGTCGAAGGCAACAAAAATTCCGGCGAAGTCCGGCGCCACAATAGGCTCCGGCAATTACATAGTGAACGTTGGTTTGGGAACGCCGAAAAAGTACTTGTCGCTTATATTTGACACCGGCAGCGATCTGACGTGGACTCAGTGCGAGCCTTGCGCTAGATATTGCTACAACCAAAAGGACCCTATTTTCGACGCTTCTCAATCATCCACGTATTCCAACATCTCTTGGAACCAGCCTGGTTGCTCCGCCGCGAAAGCTTGTATTTACGGAATACAATATGGCGATCAATCTTTCTCCGTCGGATATTTCGCCAAAGAAACCCTAACCTTAACCTCCACCGACGTTATCGACAATTTCCTCTTCGGTTGCGGCCAAAACAATCGTGGACTCTTCGGCAGCGCCGCCGGTCTCATCGGCCTTGGCCAGGACAAAATTTCCATCATCAAACAAACCGCCCAAAAGTACGGCCAGATCTTCTCCTACTGCCTCCCTAAAACCTCCAGTTCCACCGGCTACCTAACCTTCGGCGGCGGCGGCGGCGGCGGCGGCGCTCTGAAATACACGCCGATCACAAAAGCACACGGCGTCGCAAATTTCTACGGCCTCGATATCATAGGCATGAAGGTCGGCGGAACTCAGATTCCGATCTCGCAGTCGGTCTTCTCGACCTCCGGCGCGATTATCGATTCCGGCACGGTTATCACACGGCTGCCACCGGATGCGTACAGCGCCTTGAAATCAGCGTTTCAGAAAGGAATGGCGAAGTATCCGAAGGCGCCGGAGCTTTCGATTTTGGACACGTGTTACGATCTGAGCAAATACACCGCCGTACAGATCCCGAAAGTGGCGTTTCTTTTCAAAGGAGGAACAGAACTCGATCTCGACGGCACCGGAATCTTGTACGGAGCAGCAACGTCGCAGGTGTGTTTGGCGTTCGCCGGAAATCAAGATCCGAGCACCGTCACCATTATCGGGAACGTGCAACAGAAGACTCTGCAGGTGGTTTACGATGTCGGTGGAGGGAAGATTGGGTTTGGTTATAATGGTTGTTAG 1371 52.44 MASLSLMLFFAFSFLFFQSFAGKVSPDSDRLTVELAGLLPSASCTRRSPQGLREQSSLEVIHRHGPCGGGVSKAPTTTEMLVQDQARVDFINSKFSGELKSIDRLGPSKATKIPAKSGATIGSGNYIVNVGLGTPKKYLSLIFDTGSDLTWTQCEPCARYCYNQKDPIFDASQSSTYSNISWNQPGCSAAKACIYGIQYGDQSFSVGYFAKETLTLTSTDVIDNFLFGCGQNNRGLFGSAAGLIGLGQDKISIIKQTAQKYGQIFSYCLPKTSSSTGYLTFGGGGGGGGALKYTPITKAHGVANFYGLDIIGMKVGGTQIPISQSVFSTSGAIIDSGTVITRLPPDAYSALKSAFQKGMAKYPKAPELSILDTCYDLSKYTAVQIPKVAFLFKGGTELDLDGTGILYGAATSQVCLAFAGNQDPSTVTIIGNVQQKTLQVVYDVGGGKIGFGYNGC 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21324131 21328781 + Lsi04G013580.1 Lsi04g01358 661407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01358 456 Pfam Xylanase inhibitor C-terminal 306 451 IPR032799 -
Lsi04g01358 456 Gene3D Acid Proteases 105 282 IPR021109 -
Lsi04g01358 456 ProSiteProfiles Peptidase family A1 domain profile. 126 452 IPR033121 -
Lsi04g01358 456 PANTHER ASPARTYL PROTEASE AED1 37 456 - -
Lsi04g01358 456 PANTHER ASPARTYL PROTEASES 37 456 IPR001461 GO:0004190|GO:0006508
Lsi04g01358 456 PRINTS Pepsin (A1) aspartic protease family signature 132 152 IPR001461 GO:0004190|GO:0006508
Lsi04g01358 456 PRINTS Pepsin (A1) aspartic protease family signature 428 443 IPR001461 GO:0004190|GO:0006508
Lsi04g01358 456 PRINTS Pepsin (A1) aspartic protease family signature 332 343 IPR001461 GO:0004190|GO:0006508
Lsi04g01358 456 CDD cnd41_like 125 456 IPR033873 -
Lsi04g01358 456 Gene3D Acid Proteases 288 456 IPR021109 -
Lsi04g01358 456 Pfam Xylanase inhibitor N-terminal 126 283 IPR032861 -
Lsi04g01358 456 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 141 152 IPR001969 GO:0004190|GO:0006508
Lsi04g01358 456 SUPERFAMILY Acid proteases 120 456 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01358 - - - csv:101215397 764.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02646 Lsi-Chr2:32881729 Lsi04g01358 Lsi-Chr4:21324131 3.46E-93 dispersed
Lsi04g01358 Lsi-Chr4:21324131 Lsi05g02127 Lsi-Chr5:28089483 5.18E-74 dispersed
Lsi04g01358 Lsi-Chr4:21324131 Lsi06g01341 Lsi-Chr6:23987178 1.62E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g616 Blo01g01427 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01358 Lsi_Chr04 FPKM 82.48764 84.656601 35.608322 32.831768 4.984681 5.80064 6.043389 12.924547 13.537143 14.326596