Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g01361 | ATGGGCTATCTGAATTCAGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCACCTGTAAGCGGCGGAGGACTAAGTCCCTTCGTCAATTCAAGTTTGCGATTGACTGGCAAGGATAATGTTGATTTGAATCAGAATGGAAAATTCAGCTACGGATATGCTAGCTCTCCAGGGAAGAGATCTTCGATGGAAGATTTTTATGAGACACGAATAGATGGTGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTTGATGGTCATGGCGGAGCACGAGCTGCGGAGTATGTTAAGCACAATCTTTTCAGTAACTTGATCAGGCATCCAAAGTTCATATCAGATACCAAATCCGCTATAGCTGATGCATACAACCACACAGACACAGAATTTCTGAAGTCGGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATCCTAGTTGGTGACCGCTTACTTGTTGCAAATGTGGGTGACTCTAGAGCCGTTATTTGCCGGGGTGGCACTGGTGAGAATACTACAACCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGACAACGAATTGAGGATGCTGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCTTTTGGTGATAGGTTGTTAAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAGATTGATAGCTCACTCGAGTTTCTTATACTTGCAAGTGATGGACTGTGGGATGTCGTCTCTAATGAGGAAGCTGTTGCAATGACTAAACCAATTCAGGACCCAGAAGAGGCAGCCAAGAGGTTGATGCAAGAAGCATATCAGAGAGGCAGTGCAGATAACATTACTTGTGTCGTCGTTCGCTTCTTGGCAAATCAAGGAAGTCCCTCTCTTGGAACATCTGGGTAA | 951 | 45.01 | MGYLNSVLSCSSQIHAAEEAPVSGGGLSPFVNSSLRLTGKDNVDLNQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYNHTDTEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTGENTTTIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGSPSLGTSG | 316 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 21361522 | 21366112 | + | Lsi04G013610.1 | Lsi04g01361 | 661410 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g01361 | 316 | PANTHER | ALPHABET, ISOFORM E-RELATED | 3 | 309 | - | - | |
| Lsi04g01361 | 316 | ProSitePatterns | PPM-type phosphatase domain signature. | 83 | 91 | IPR000222 | GO:0043169 | |
| Lsi04g01361 | 316 | SMART | PP2C_SIG_2 | 63 | 303 | IPR001932 | - | |
| Lsi04g01361 | 316 | SUPERFAMILY | PP2C-like | 47 | 303 | IPR036457 | - | |
| Lsi04g01361 | 316 | ProSiteProfiles | PPM-type phosphatase domain profile. | 52 | 303 | IPR001932 | - | |
| Lsi04g01361 | 316 | CDD | PP2Cc | 51 | 303 | IPR001932 | - | |
| Lsi04g01361 | 316 | Pfam | Protein phosphatase 2C | 81 | 296 | IPR001932 | - | |
| Lsi04g01361 | 316 | Gene3D | - | 41 | 307 | IPR036457 | - | |
| Lsi04g01361 | 316 | SMART | PP2C_4 | 42 | 301 | IPR001932 | - | |
| Lsi04g01361 | 316 | PANTHER | PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C | 3 | 309 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g01331 | Lsi-Chr2:17811663 | Lsi04g01361 | Lsi-Chr4:21361522 | 1.47E-40 | dispersed | |
| Lsi04g01361 | Lsi-Chr4:21361522 | Lsi05g00082 | Lsi-Chr5:1550775 | 6.71E-112 | dispersed | |
| Lsi05g00962 | Lsi-Chr5:16780730 | Lsi04g01361 | Lsi-Chr4:21361522 | 1.08E-21 | dispersed | |
| Lsi06g01307 | Lsi-Chr6:23630470 | Lsi04g01361 | Lsi-Chr4:21361522 | 3.97E-31 | dispersed | |
| Lsi08g00854 | Lsi-Chr8:16959074 | Lsi04g01361 | Lsi-Chr4:21361522 | 1.65E-38 | dispersed | |
| Lsi08g01642 | Lsi-Chr8:24282613 | Lsi04g01361 | Lsi-Chr4:21361522 | 6.46E-38 | dispersed | |
| Lsi11g00389 | Lsi-Chr11:4007795 | Lsi04g01361 | Lsi-Chr4:21361522 | 1.32E-39 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g01361 | K17506 | - | csv:101216117 | 554.673 |