Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01364 ATGGTCTGCGAGATGGAGACTGGTGTTATTGAAGATATGGACATCGAAGCGGTTCCTTCTATGTGGCCTGAAGATGTTGGACCAGATGTTAGAAAGCAGTTCAATGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACAATTGTTGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGATCTTCACAATTACAATATCTTGCAAAGCAGTGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTTAAAGAAGAACTTGACATTCTAAGCAAGCAAAGGAAAGAAGTTGAGCTCAAGAAATTAAAAATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATCTTAGAAGAATCTTGTGATCTATGGCAAGATATTCCAAGCAGGAAAACTGATTTCGTCGTTCAAAGTAAGAGAGTCGAAATTGATGCAGAGTATGATACTGTGACATACTGGAAGCAACGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTCTACAGCGAGAGCAGATGCTTGCAGAGAAGCTTAAGGAAAACATAAAAAATATTGAAAAGCAGTCCTCACCAGTTGAGGAGTTGTCACAGATTCTTAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAGTTGTTTTTGGTCATCAGGACAAAGAGCTGCGCTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTCAGTGGTGCTGGTGTTAAGGAATCTCAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTACCTGCAAAGAGGGAGATTCAGTTTGATACAGAATTATTTGGGCTGAAGACCTTTTTGATTTACGTTGAACCTGTGTTTAGCAAGGCCGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACCGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGTGAGGAGATTGCAGTACAAAAAGCCAAGGAATCAGAGCTGAACAAAACAATTCATATCACAGAGGAAACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCACATGAAATTAGATCTCCACTGTCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAACAACATCTGTTAGATGTTATGCTGTCTTCAGGAGATTTGGTGCTTCAACTTATAAATGATATCTTGGACCTTTCTAAGGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAGTTTCGTCCAAGAGAGGTTGTAAAACATGTTCTACAGACTGCAGCTGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTACCTATAGAGGTCATTGGAGATGTTCTTAGGATTCGGCAAATCCTCACCAACTTGATCAGCAACGCCATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTCTATGTGTTACCTTATCCACCCATTGGGACAGAAGAATGCCATAAGAAATCAACGGCTGAAAACTCAACAGTTCCCATAAATGGTTTGCAAGAAGGAACATGTCTTCCAGCCCCTCAAAATGGCTTGTGTGGCCAAAAACACAGCGACAGAAATCATTTGCATTGTGATGCACCAGGAACCCCAAGCAAGAGTGAAACCACAATGAATGGAAACAGAGAAAACAAATCTTGTTCAGCTGAAACGACGGTATGGATACGCTGTGATGTATACGACACAGGAATTGGAATACCAGAAAATGCATTACCAACCCTTTTTAAGAGGTACATGCAAGCTAGTGCCGATCATGCTCGAAAGTATGGAGGGACTGGACTTGGGCTAGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTCACCGTTTCCAGCCGAGAGAACCAAGGATCTACATTTACATTTGTATTGCCATACAAGGTTTCAACCACCTGCAGTCCTTCCGATGATTCCGACGAGTTGTCAGACGACGACTCTACAAATGACGAAATGACTGAGGGTTTTTTCCAATTCCAACCCCACAGTTTCAGTTCGCTATCATCTTCTAATGGATCCACAAGGATCCCAAACTCATTGTTGCATACAACTGGGTATCCCACCTCAACCAAACTCAATGGATTAGCTGAAGGTGGTTCTTATCCTATCCCCTCAAACAACATCGCACCACAAGAGGCTGCTTCTCTTAGAGATGCCCGTTACGTCAATGCCGCTGCCGTAACCTCAAGTGAATCACAATGTTCATCAAGTCAGATCAACCCAAATCTTGATAACCAAAACTTGTCTCGGTTGCAAAATGTCGGCGGTGTGAATTCCCTTCACAAATCAGAAACAACAAAGCAAGGAGATAGGTTGGAAAAACAAAGTAATAAACTTCAAAAAACAGATCAGGGGAAAGAGAGATCCGATGCAAGTAATCACTGCAGAAATAGCAGTAGTGGTTCTGAAGTAATAATAGCATTGGAACCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGACTCAGTCCATGATGAAGAAGTTCGGCCAAAAAATCGACGTCGTAACTAATGGCATTGAAGCTGTTCGTGCAGTTCAACGACGTTCTTACGATCTCATTCTCATGGATGTATTCATGCCAGTTATGGATGGGCTTGAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGTTGGGAGGCAGCTGTTAATGCTGGAATAATCCAACCAACTACACCTTGGACTCCCTCCTCCCGAAACAGGATGCCCATCATTGCTATGACGGCGAATTCAATGTCAGAAAGCGCAGATGAGTGTTATGAAAATGGTATGGACTCATTCGTATCAAAGCCAATCACGTTCCAGAAGTTGAAAGATTGTCTTGAACGATATTTACCACCACCACCTCCCTTGTAA 2997 41.41 MVCEMETGVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDLWQDIPSRKTDFVVQSKRVEIDAEYDTVTYWKQRAMDLEKLLEASLQREQMLAEKLKENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQQHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGTEECHKKSTAENSTVPINGLQEGTCLPAPQNGLCGQKHSDRNHLHCDAPGTPSKSETTMNGNRENKSCSAETTVWIRCDVYDTGIGIPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENQGSTFTFVLPYKVSTTCSPSDDSDELSDDDSTNDEMTEGFFQFQPHSFSSLSSSNGSTRIPNSLLHTTGYPTSTKLNGLAEGGSYPIPSNNIAPQEAASLRDARYVNAAAVTSSESQCSSSQINPNLDNQNLSRLQNVGGVNSLHKSETTKQGDRLEKQSNKLQKTDQGKERSDASNHCRNSSSGSEVIIALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLEATRLIRSFEETGSWEAAVNAGIIQPTTPWTPSSRNRMPIIAMTANSMSESADECYENGMDSFVSKPITFQKLKDCLERYLPPPPPL 998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21402488 21411643 - Lsi04G013640.1 Lsi04g01364 661413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01364 998 CDD REC_hyHK_CKI1_RcsC-like 854 988 - -
Lsi04g01364 998 Gene3D - 849 992 - -
Lsi04g01364 998 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Lsi04g01364 998 ProSiteProfiles Response regulatory domain profile. 853 992 IPR001789 GO:0000160
Lsi04g01364 998 MobiDBLite consensus disorder prediction 771 805 - -
Lsi04g01364 998 MobiDBLite consensus disorder prediction 571 586 - -
Lsi04g01364 998 MobiDBLite consensus disorder prediction 565 586 - -
Lsi04g01364 998 PRINTS Bacterial sensor protein C-terminal signature 631 649 IPR004358 GO:0016310|GO:0016772
Lsi04g01364 998 PRINTS Bacterial sensor protein C-terminal signature 655 668 IPR004358 GO:0016310|GO:0016772
Lsi04g01364 998 PRINTS Bacterial sensor protein C-terminal signature 596 610 IPR004358 GO:0016310|GO:0016772
Lsi04g01364 998 SMART REC_2 852 988 IPR001789 GO:0000160
Lsi04g01364 998 MobiDBLite consensus disorder prediction 806 835 - -
Lsi04g01364 998 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 993 - -
Lsi04g01364 998 Pfam Response regulator receiver domain 854 921 IPR001789 GO:0000160
Lsi04g01364 998 Gene3D - 367 435 - -
Lsi04g01364 998 ProSiteProfiles Histidine kinase domain profile. 378 671 IPR005467 -
Lsi04g01364 998 Coils Coil 181 208 - -
Lsi04g01364 998 MobiDBLite consensus disorder prediction 674 694 - -
Lsi04g01364 998 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Lsi04g01364 998 SMART HKATPase_4 482 671 IPR003594 -
Lsi04g01364 998 Gene3D - 436 675 IPR036890 -
Lsi04g01364 998 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Lsi04g01364 998 Coils Coil 92 112 - -
Lsi04g01364 998 SUPERFAMILY CheY-like 852 992 IPR011006 -
Lsi04g01364 998 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Lsi04g01364 998 Coils Coil 342 362 - -
Lsi04g01364 998 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 669 IPR003594 -
Lsi04g01364 998 MobiDBLite consensus disorder prediction 771 842 - -
Lsi04g01364 998 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 669 IPR036890 -
Lsi04g01364 998 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 993 - -
Lsi04g01364 998 Gene3D PAS domain 213 348 - -
Lsi04g01364 998 CDD HATPase_EvgS-ArcB-TorS-like 487 668 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01364 Lsi-Chr4:21402488 Lsi11g01360 Lsi-Chr11:22210127 1.15E-44 dispersed
Lsi11g01345 Lsi-Chr11:22083090 Lsi04g01364 Lsi-Chr4:21402488 1.27E-06 dispersed
Lsi04g01364 Lsi-Chr4:21402488 Lsi10g00055 Lsi-Chr10:939481 3.11E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25192 PF02518 HATPase_c 4.10E-28 CL0025 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01364 - - csv:101219807 1757.27