Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01367 ATGGAGCTTGATGGTGTTCGTGGTGATTGGGGGGTGACTCGGAAGAGGAAGAGAAATGAGGGAGAAAACAACATGTTGAGCAACTTCTCTTTGGATGATCTCAACCAAGACATTCTCGAGAGGGTGCTTTCGAGGCTACCGACCTCGGCATTCTTTCGCCTGTCTTCAGTGTGCAAAAGATGGAAATCGGTTGCAGCTTCTTCAAGCTTCAAGTCTGCGTGCTCGGACATTTCTGCACGCGACCCCTGGTTTTTCATGGTTGATCCACATCTCAACCGCTCGATTGTTTTCGATTCGACTGAGAAAAATTGGAAGAAACTTAACTATCCAAACCTACTTCAGAATCGTCATCTCGACTCGATGCCTGTTGCAGCCACTGGTGGTTTGATCTGTTTTCGCAATTCATCGGGAAACTTTATTGTGTCCAATCCTTTAACAGGCTCCTGTAGCGAGCTTCCTCCTGTGGATCTTGACCAGAAAAATCAATCTCTTCATGCTATTGTGATGAGTGCAGACCCTGACGGTTGTAAGGGCTCTTACAAGCTTGTGTTGGTCTATGGCCAAGTTCCAAAGCTTCGGTTCAAAGTCTACCGTTCGACCACGGGTTGCTGGGATGACGATGTTACCTTGAGTCGAAAAGTTGATGATTCTATCGATTTCAACTTCAATGATGATACTGTTGTGTACTTCCTGAGTCGGACAGGAAATGTAGTGTCCACAAACATGCAGAGAAGCCCATCCAAGCAATACTCATCGGTCATTACAAACAAGAGCGGAGAGGATACCGTTTATTTCATTAGCTCTTCCGGGACTATCATGGCTTGTAATCTGAGCAAGAGATGCTTTGTGGAGTACCCCAGGCTCTTGCCTGTCTTTTCAGAGTATTCTATCGATGTTGTTGAGTGTCGAGGTGAGATGTTAGTTGTTATGTTGTCTGAGTTTCTCGAAACTGCAAGCCTTAGAGTTTGGAGATACAACGAGGAAGCTCGAACTTGGCATCAAATTGCAGCATTGCCTCCTGCAATGTCACACGAGTGGTACGGCAAGAAGGTTGATATTAACTGTGTTGGAGCTGGTGACCAGATACTCATATGCATGAACTCGAATGAACTTTATACGTATCTACTGTGCGATCTCATCGAGAATCAGTGGACTGTATTGCCGAAATGCTATACGAATGGTGAAGCTGTGGAGTTTATGTCTGCCTTTTCATTTGAGCCTAGAATTGAGGCTTCTTTCTATTCCGTAATTTGCCGAGTTGCAACAGTATTGAAGACGAGGTTTACGGCCCCAGGGTTTTGGCTTTCTGGTCTCAAGCTTTTTCAGTTTTCTTTAACTTTGCTCTCTGATCATTCAGAGAGACAACACCTGGAGGCTTGCGTAGCTCAGGCCAAGGAAATTCTGCACCAAATCGACAATCCATCTCCGGCTTCACAAAGTAATTCATCAAATGGAGGATATCTTTTTGAGGGCCATCTCACTGTTGATCCAGAGCCACCCCAGCCCCAATGGCTGGTGCAGTCAAATCTCTTGACAGCCGCCGCAGCTGCGCTATCTAATGCTGAATCTTCTCAAAGTCTGGCTGAGAACAGCAACACTTCTGAGAATGCTACTAATATTCTTCAAGCGCTTATTGAAAATCTAGATAATTCTATAGATGGGTTCCTGGATTTGGACACGGCTAGTGGACCACCAAGAGTCCCTCCTGCAAGTAAAGAAGTCGTCGCAAAACTTCCTGTAATTACCATAACAGATGAAGTTCTTGCGAAGCTAGGAAGAGATGTACAATGTGCTATTTGCAGGGAAAACTTAGCTGTTGATGACAAGATGCAGGAATTGCCTTGCAAACACACATTCCACCCACCTTGTTTGAAGCCCTGGCTGGATGAGCATAACTCTTGCCCGATCTGTCGACATGAATTGCCCACCGATGACCACGCATACGAGAGCTGGAAGGAGCGAGAGAAAGAGGCTGAAGAAGAAAGAAAAGGAGCTGCAAATGCTGTTCGTGGTGGTGAATATATGTATATTTGA 2034 45.43 MELDGVRGDWGVTRKRKRNEGENNMLSNFSLDDLNQDILERVLSRLPTSAFFRLSSVCKRWKSVAASSSFKSACSDISARDPWFFMVDPHLNRSIVFDSTEKNWKKLNYPNLLQNRHLDSMPVAATGGLICFRNSSGNFIVSNPLTGSCSELPPVDLDQKNQSLHAIVMSADPDGCKGSYKLVLVYGQVPKLRFKVYRSTTGCWDDDVTLSRKVDDSIDFNFNDDTVVYFLSRTGNVVSTNMQRSPSKQYSSVITNKSGEDTVYFISSSGTIMACNLSKRCFVEYPRLLPVFSEYSIDVVECRGEMLVVMLSEFLETASLRVWRYNEEARTWHQIAALPPAMSHEWYGKKVDINCVGAGDQILICMNSNELYTYLLCDLIENQWTVLPKCYTNGEAVEFMSAFSFEPRIEASFYSVICRVATVLKTRFTAPGFWLSGLKLFQFSLTLLSDHSERQHLEACVAQAKEILHQIDNPSPASQSNSSNGGYLFEGHLTVDPEPPQPQWLVQSNLLTAAAAALSNAESSQSLAENSNTSENATNILQALIENLDNSIDGFLDLDTASGPPRVPPASKEVVAKLPVITITDEVLAKLGRDVQCAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHAYESWKEREKEAEEERKGAANAVRGGEYMYI 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21455677 21461050 + Lsi04G013670.1 Lsi04g01367 661416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01367 677 Pfam F-box domain 32 69 IPR001810 GO:0005515
Lsi04g01367 677 SMART fbox_2 34 74 IPR001810 GO:0005515
Lsi04g01367 677 PANTHER F-BOX/KELCH-REPEAT PROTEIN 25 412 - -
Lsi04g01367 677 Coils Coil 648 668 - -
Lsi04g01367 677 Pfam Ring finger domain 596 638 IPR001841 -
Lsi04g01367 677 SUPERFAMILY RING/U-box 591 644 - -
Lsi04g01367 677 ProSiteProfiles Zinc finger RING-type profile. 597 638 IPR001841 -
Lsi04g01367 677 SUPERFAMILY Galactose oxidase, central domain 94 341 IPR011043 -
Lsi04g01367 677 SMART ring_2 597 637 IPR001841 -
Lsi04g01367 677 SUPERFAMILY F-box domain 23 93 IPR036047 GO:0005515
Lsi04g01367 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 560 644 IPR013083 -
Lsi04g01367 677 ProSiteProfiles F-box domain profile. 28 73 IPR001810 GO:0005515
Lsi04g01367 677 PANTHER F-BOX PROTEIN FAMILY, ATFBX13-LIKE PROTEIN 25 412 - -
Lsi04g01367 677 Gene3D - 24 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01367 Lsi-Chr4:21455677 Lsi09g01825 Lsi-Chr9:27050267 2.68E-27 dispersed
Lsi05g00881 Lsi-Chr5:15215200 Lsi04g01367 Lsi-Chr4:21455677 8.86E-09 dispersed
Lsi04g01367 Lsi-Chr4:21455677 Lsi03g02121 Lsi-Chr3:32436576 7.30E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01367 - - csv:101218457 783.097