Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01368 ATGGAAACATCTGTCACCTCCGCCGCCGGCGCCACCATTTTGTCGTCCTCCTCCGCCGTCCTTGGCCGCAGACGTCGATGGATTCTCATATCCAACAAAACTAACAGACGCAAATATACTCTCAAGAGAGGAATTGAACATCGTTTTCCCCTTTTCAATGAATTTTCAGAGCGAACTGGTACATTAGTCTCGGGAACTTCATCTGCTTCTATGAAGAAGACGATTTCGAATAGATATGGTGGTAGAAATTCGAATATCAACAAGATTTACAAGCGTTTGGAATCTTGTTTGGTGATACCACCGCCGAGGGGTAAGCCACCTCGCGCTATCATCAAGTTCCTCGGCGGCGCTTTCATCGGAGCTATTCCTGAAGTCACTTACAGCTACTTAATTGAGCTTTTGGCAAATGAAGGGTTTCTGATAATCTCAGTACCTTACAATGTGACTTTCGATCATGCCGATGCTGCGAGACAAGTATTTGAGAGGTTTCATGCCTGTTTGGATACCATTTTAGCGTCCGGATTGCCCGATGAAGACATTTCACCTGCTCAACTCGTTAATCTTCCTCTATTTTCTGTGGGTCATAGCAATGGGGCGCTTCTGCAAGTACTCACAGGGAGCTATTTCTCTGAGAAGATACCTAAGGCTAATGCTATAATCTCCTTCAACAACAGGCCAGCAACAGAGGCTGTTCCTTACTTTGAGCAGTTGGGCCCTTTAACCAGTCAGATGATGCCAGTTGTACAAGCGTCTCCAGTTTACTCAATGGCTAGGAGTGTCTCAGTGGATGCTTGGAAGATCTTGCTTGATGCTGCTGGAGCTATTGTTCCAGACAGAGATCAAGAAGTCTTGAATTCTCTGACCAATTTTGTTGATCAGTTGCCCTCAGTGTTTAACCAGGTTACAGAAGGGGTATCGGAGTTCAGGCCAACTCCATCTGAGAATCGAGATTGCTTCAAGTGTAAATACAATGTCCAAAACACGCTCCTGGTGAAGTTCATTTCGGACACGATTGACGAGACCGATCTACTTGAACAGACACTGAAGTCTCGCATCGAATCTATTAATGGCACACTTGAAAAGGTTGAGTTAAGCGGTAACCACATCACACCCTGCGTACAGGAACCAAAGTGGGAGGTAGGTTATTTGTACACTCCTGCAGATGCTGTTGCTCAGGCGCTTAAATCTATATCTTTGAGAGAAACAAGAGAGCTTGCTAAAACCTTAAGCAACTGTGACGAAGATACAGCTGGTCCATCAGGTGGTACACTGAAAGAGCCAAAGGACGATCCATTAGATTTTGGAGTTGTAGAGGAGGTTATTTGGTCATCCCAACCGAATACGGATGATGTCATTCCGTTGTCACATGAACCAGATGTGATTGAGAAGCAGTTATCTTCGTATATTGGAGACCCTAAACGGGTTAATGAGACGCAGACAACTATTCGGAGCATACGGAAGTTGCCATGGTTCATTCAGTTGATGACACCATACATATTCACTGACGACGACATAAACGATGGACACATTATTTTTGTTCACCCAAAAGAAGTTATTAGATAA 1563 44.53 METSVTSAAGATILSSSSAVLGRRRRWILISNKTNRRKYTLKRGIEHRFPLFNEFSERTGTLVSGTSSASMKKTISNRYGGRNSNINKIYKRLESCLVIPPPRGKPPRAIIKFLGGAFIGAIPEVTYSYLIELLANEGFLIISVPYNVTFDHADAARQVFERFHACLDTILASGLPDEDISPAQLVNLPLFSVGHSNGALLQVLTGSYFSEKIPKANAIISFNNRPATEAVPYFEQLGPLTSQMMPVVQASPVYSMARSVSVDAWKILLDAAGAIVPDRDQEVLNSLTNFVDQLPSVFNQVTEGVSEFRPTPSENRDCFKCKYNVQNTLLVKFISDTIDETDLLEQTLKSRIESINGTLEKVELSGNHITPCVQEPKWEVGYLYTPADAVAQALKSISLRETRELAKTLSNCDEDTAGPSGGTLKEPKDDPLDFGVVEEVIWSSQPNTDDVIPLSHEPDVIEKQLSSYIGDPKRVNETQTTIRSIRKLPWFIQLMTPYIFTDDDINDGHIIFVHPKEVIR 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21462591 21473676 + Lsi04G013680.1 Lsi04g01368 661417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01368 520 PANTHER OS04G0405600 PROTEIN 66 412 IPR010765 -
Lsi04g01368 520 Pfam Protein of unknown function (DUF1350) 105 409 IPR010765 -
Lsi04g01368 520 PANTHER INITIATION FACTOR 4F SUBUNIT (DUF1350) 66 412 - -
Lsi04g01368 520 SUPERFAMILY alpha/beta-Hydrolases 99 213 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01368 - - - csv:101217829 734.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01280 Lsi-Chr3:23624358 Lsi04g01368 Lsi-Chr4:21462591 5.10E-38 dispersed
Lsi04g01368 Lsi-Chr4:21462591 Lsi09g01042 Lsi-Chr9:15553644 2.48E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g189 . Blo12g01036 . Bda03g00118 . . . . . . Cma01g01688 . Car09g00331 . . . Cpe06g00271 . . . . . . . Cla05g01648 Cam05g1761 Cec05g1767 Cco05g1824 Clacu05g1750 Cmu05g1635 Cre05g1763 . . Cone17ag0958 Cone20ag0302 Lsi04g01368 . . . . . . . . Bpe04g00103 . . Sed02g0920 . . Cma09g00382 . Car01g01303 . . Cpe02g00304 Bhi09g03056 Tan01g3512 Cmetu07g1287 . Hepe01g1933 Mch11g0469 . . . . . . . . . . . Cme07g00158
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009713 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 3 3 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01368 Lsi_Chr04 FPKM 2.008982 1.807713 0.914782 0.693492 6.308532 6.768813 6.531273 0.259374 0.490188 0.190895