Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01373 ATGCCCCTCATCAACGCCGCCGCCGCCGCCCACCGCCCTCACCAGTCATCTGCATCCCAATCACCTCAATTCCACATACCTACTACTGCCTCCGATGACGACGACGACGATCTTCTTCCTTCCACCCAGACAGTCCTCTCCTCGCGATCTTCAACCTCGCAAAAACCCCTCGCGACCTCCGACTTATCCATCCACATTCCCGTTCCCAAGAGGCCGAAGCGTTCTGCTCCGATGGCCACTGGCAAGGAAAACGTTCCCTCTTTAACAAATTTTGGTAGATATAATGGGGCTGTTGTTTTGGATGACGGTGAAGTGTTCGGAGCTTCGGATATTGATTTAGGTTGCAGTTTGGATTTGATACAGCCGAGCATTGTTGGCTGTAGTTACGAAACTCACGATGTAAACTCGGGAGAGGAGATAGTTGATGGGGACGATGATTTTCCTGATGCGATGGATGAATGTAAGGGGTCGAAGGTAAAGGGGGGCTACCTGGTCAATTCCATTGAATCTAGGTTAGTGAATTCGAGGGTAAATTGCGATGTTGGGGTCAGTGGCAGTGATGGTTTTGAGTCGGATACAGAGCTAGACTTGTTGCTCAATCTGCATTCGCAACTTGATGAGGAAGACGGTACTACTGGAGTGGGATTTGATACTGAGGAAACAGATTTTCTAGTGGATGAAGAAGGTCCGATTCATTGTCCTCTTTGTGGGGTTGATATTTCTGATCTTAGTGACGAGCAGCGTCTTGTTCACACCAATGATTGTATTGACAAAGAGGACGCCCAAGCTCAAAATGCTGCTCTTAGCCCTGATAAAAAGCAAACTTCAGGTCCTCAACAGTCTGGCGATAATTCCAGATTTTCAACTGTTCTCAAATGGTTGCATGATCTTGGTTTATCGAAATATGAAGACATTTTTGTTAGGGAGGAGATCGATTGGCACACGTTGCAGTGGTTGACAGATGAGGATCTCAATAATATGGGTATTACTGCACTTGGCCCCCGAAGGAAGATCACACATGCTCTCTCTGAACTCAGAAAAGAATCATCTGCGGTTGAAACGTGCACGAATTCACATGCCCCTTCTGTTACTGGGCAACAGAGTAACAATGGTTCAGATGGGCGTGAAGGATCAATCAATGGAACTAATAGAACACCTGCGAACAAGTTGATCACTGATTATTTCCCAGGCTTTGCCACTAATAAGAAAAATGCATGCAGCAACACTAGTGGTCAGAAAGATGTGGGGAAAAAAATACCCGACTCTCTTCAGAAAGGTATAACTGCAAAAAGAAATGTAAGAAATGGGAAGCTTGGGAATGTTCCAGTTTGGAGTTGTATACCAGGGACACCATTTAGAGTGGATGCTTTTCGACATCTTAGAGGAGATTGTTTCCATTGGTTTCTTACTCACTTTCATATGGATCATTATCAAGGTTTGACGAAGTCATTTTGTCATGGGATGATTTATTGTACGTCTATAACAGCAAAGCTAGTAAACATGAAGATTGGAATTCCATGGGAAAGGTTACAAGTTTTACCTCTCAACCAAAAAATTAACATTGCGGGAATAGATGTAACCTGTTTTGATGCTAATCATTGCCCTGGTTCAATTATCATACTCTTTGAACCACCAAATGGTAAGGCTGTTCTACATACAGGGGATTTCCGATTTTGTGAGCAAATGGGAAGCTTGTCTGTTTTTCAAACATGTCGTATCCATACCCTGATCCTTGATACCACTTATTGTGATCCACAGTATGATTTCCCAAAGCAGGAAACTGTTATACAATTTGTAATCGATGCCATTCAAGCCGAAGCTTTCAACCCTAAAACTCTTTTCCTGATTGGATGTTATACCATCGGAAAGGAACGACTTTTTTTGGAAGTTGCCCGTGTCCTGCGCAAGAAGGTATATGTAACTGCAGCAAAGTTACGGATTTTGAAATGCTTGGGGTTCTCAGCGGAGGACATGCAGTGGTTTACAGTGAATGAACGGGAAAGCCACATACATGTTGTACCCCTGTGGACACTTGCGAGCTTCAAACGACTGAAGCACGTATCAAATCAATATGCAAATCGATTCAGTCTTATAGTTGCTTTCTCTCCTACCGGCTGGGCACTTTCAAAAGGAAAGAAGAAATCTCCTGGGAGAAGGTGGCAGCAAGGTACAATTATAAGCTTCTCAGAACTCAAGGATTTTGTAAAGCTTGTATCTCCAGCAAACATAATACCAAGTGTTAATAATCATGGACCTGACTCTGCCCGTGCCATGACCTCGCTTTTGTCATCTTGA 2295 43.88 MPLINAAAAAHRPHQSSASQSPQFHIPTTASDDDDDDLLPSTQTVLSSRSSTSQKPLATSDLSIHIPVPKRPKRSAPMATGKENVPSLTNFGRYNGAVVLDDGEVFGASDIDLGCSLDLIQPSIVGCSYETHDVNSGEEIVDGDDDFPDAMDECKGSKVKGGYLVNSIESRLVNSRVNCDVGVSGSDGFESDTELDLLLNLHSQLDEEDGTTGVGFDTEETDFLVDEEGPIHCPLCGVDISDLSDEQRLVHTNDCIDKEDAQAQNAALSPDKKQTSGPQQSGDNSRFSTVLKWLHDLGLSKYEDIFVREEIDWHTLQWLTDEDLNNMGITALGPRRKITHALSELRKESSAVETCTNSHAPSVTGQQSNNGSDGREGSINGTNRTPANKLITDYFPGFATNKKNACSNTSGQKDVGKKIPDSLQKGITAKRNVRNGKLGNVPVWSCIPGTPFRVDAFRHLRGDCFHWFLTHFHMDHYQGLTKSFCHGMIYCTSITAKLVNMKIGIPWERLQVLPLNQKINIAGIDVTCFDANHCPGSIIILFEPPNGKAVLHTGDFRFCEQMGSLSVFQTCRIHTLILDTTYCDPQYDFPKQETVIQFVIDAIQAEAFNPKTLFLIGCYTIGKERLFLEVARVLRKKVYVTAAKLRILKCLGFSAEDMQWFTVNERESHIHVVPLWTLASFKRLKHVSNQYANRFSLIVAFSPTGWALSKGKKKSPGRRWQQGTIISFSELKDFVKLVSPANIIPSVNNHGPDSARAMTSLLSS 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21530224 21539394 - Lsi04G013730.1 Lsi04g01373 661422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01373 764 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 231 761 - -
Lsi04g01373 764 MobiDBLite consensus disorder prediction 349 387 - -
Lsi04g01373 764 CDD SAM_superfamily 290 344 - -
Lsi04g01373 764 MobiDBLite consensus disorder prediction 12 28 - -
Lsi04g01373 764 MobiDBLite consensus disorder prediction 1 84 - -
Lsi04g01373 764 Gene3D - 447 747 IPR036866 -
Lsi04g01373 764 SUPERFAMILY SAM/Pointed domain 285 347 IPR013761 -
Lsi04g01373 764 Pfam DNA repair metallo-beta-lactamase 657 715 IPR011084 -
Lsi04g01373 764 SMART SAM_4 282 348 IPR001660 GO:0005515
Lsi04g01373 764 Pfam SAM domain (Sterile alpha motif) 284 346 IPR001660 GO:0005515
Lsi04g01373 764 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 231 761 - -
Lsi04g01373 764 Gene3D - 281 358 IPR013761 -
Lsi04g01373 764 ProSiteProfiles SAM domain profile. 285 348 IPR001660 GO:0005515
Lsi04g01373 764 CDD SNM1A-1C-like_MBL-fold 429 585 - -
Lsi04g01373 764 MobiDBLite consensus disorder prediction 262 285 - -
Lsi04g01373 764 SUPERFAMILY Metallo-hydrolase/oxidoreductase 462 747 IPR036866 -
Lsi04g01373 764 Gene3D - 588 725 - -
Lsi04g01373 764 MobiDBLite consensus disorder prediction 267 285 - -
Lsi04g01373 764 MobiDBLite consensus disorder prediction 40 60 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01373 K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein - csv:101218609 1317.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02098 Lsi-Chr2:27173738 Lsi04g01373 Lsi-Chr4:21530224 8.45E-06 dispersed
Lsi04g01373 Lsi-Chr4:21530224 Lsi07g00937 Lsi-Chr7:11547579 4.10E-56 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g184 . Blo12g01034 . . . . . . . . . . Car09g00326 . . . . . . . . . . . Cla05g01642 Cam05g1752 Cec05g1761 Cco05g1817 Clacu05g1743 Cmu05g1628 Cre05g1755 Cone4ag1709 Cone7ag1626 . . Lsi04g01373 . . . . . . . . Bpe04g00105 . . . . Cmo09g00379 Cma09g00377 . . . . . Bhi09g03063 Tan01g3503 . . Hepe01g1928 Mch11g0465 . . . . . . . . . . . Cme07g00163
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008703 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01373 Lsi_Chr04 FPKM 10.185528 11.063871 13.615752 13.513124 11.380376 11.462152 12.155199 23.144678 24.428364 24.102373