Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01375 ATGAACGTGTCCAAGAAAGGAATGCAAGCCAACGAGGTAAAACTAAACACTGGAAGCAAGGTGACAGCTTTGAATCCAAATGCCGCTGAGTTTATTCCCTTTGCCCTCAGATCATCTCCAGTTGGAAGTAGTAGTGTGCCAGATTTGACAGAAAGATTTTCTACTTCTGGAACATTGGGGAAAGCTGTTCTAGATCGGACCGAGTCATCTGTATCAAATAATTCTGATGATGAGGCTCGTCAATTCTGGAGGCATCAGCTCCCTGATGATATCACACCTGATTTCAAGTCAATGGGAGAAGATGAGAACCTATCTCTTGGAAATATTTCGTTGGCAGGCTTATCCTTGCATGATGATAGTGAAGCCTCTTTATTCGCTGCTACTACTGGCAATGAGTATCTGTTGAACGATCAGCAGGATTCAAATCTAAATCACTTTAATGGAAGTCAATTTTCCGACAAGTTCAGATTCTCAACTGCTTCTTATGGAGAAGATCCATCTTCAGCCAGTCTTTTCCAAATTTCAAATAAACCTTGGCAGAAGCCTGTTCTTAACAGTAATCTACCGGTTGGCAACGAGCGGCACCTTCCCTATCTCGGAAATTCTGGGAGGGGATTAGCCATGGATGTCTTGAGTGAGCAAACAACTATGGATGAAAGTGATACTCTGAACCCTGTTGAGTTTTTGGCTTTACAATTCCCTGGTTTTGCTGCTGAAAGCCTCGCAGAAGTTTACTTTGCGAATGGAGGTGACTTAAACCTGACTGTTGAAATGCTCACTCAATTAGAGGTATTGGGTGGAAGTAACATTTCATCTTCTTTATCTTCAAAACATTTTAACATATTGGTTTCTCCCTTCCTTTTGACATATACATACCTTGAACATTGTCTTCCTTGTTGTATGAAGAATTTACCAGCTAGTTTTTGTGATCAGCATCATGTTCTCTTATCTTTTGTGTCACTGCATTTACAACTCAATAGTTACTATACTCTTCAAGTTGATGGTGGGATAAGTCAAAATCTGAATTCCAAGACAATGTCTGCCCCCAATCTTGGTGCAATGGACTTTCCTGCACTTACAGTGTCAGGTGGTCAAAATGGTCATCCAAAATTTGATGGGGCTGATCTTCAACAAAGCACCAATCCTTATCTTTCTTCTGATAAGGATGGCATGATTTTCTTCAAGTCCAGCACCGGTCCATCTAGAGGTGCCACTGATTTTGCTTCCACTGTCAGGAAATTGGCATCTCAGGATTCTGGTATATGGAAGTACAATGGAAACGGTTCTGCTGATGACTCTATTGGCTCAAGTAGAAGTTCTCAAATTTTAGCTAGCAAATACACTACTGGTGGTCATGGGAAAGACACCTATAGTGAGAGGTTGCTACACCGTGGTTCAACTCGGGCTGCTCCAGTTTGGCTTGAAACAGGCGAAGCAGTTGCAAATATATATTCTGAGCAGCGGGAGGAAGCACGTGATCATGCACGCTTGCGAAATGTATATTTTGAACAGGCACGACAAGCGTACCTCATTGGTAATAAGGCTCTAGCAAAGGAACTAAGTGTGAAGGGACAGTTACATAATATGCACATGAAGGCAGCTCATGGAAGGGCCCAAGAATCTATTTATCGGCAGAGGTTTGTTTCCCTTTGCTGCTTTTGTCTAGACTCGAACAAGGTTGATTCAGGTGAAATTTCATGGTTAATTTTGATTTCCTATTATGGTCATTCTTGCAACTATGTGTTCAAAGATAATTTGTAG 1761 41.57 MNVSKKGMQANEVKLNTGSKVTALNPNAAEFIPFALRSSPVGSSSVPDLTERFSTSGTLGKAVLDRTESSVSNNSDDEARQFWRHQLPDDITPDFKSMGEDENLSLGNISLAGLSLHDDSEASLFAATTGNEYLLNDQQDSNLNHFNGSQFSDKFRFSTASYGEDPSSASLFQISNKPWQKPVLNSNLPVGNERHLPYLGNSGRGLAMDVLSEQTTMDESDTLNPVEFLALQFPGFAAESLAEVYFANGGDLNLTVEMLTQLEVLGGSNISSSLSSKHFNILVSPFLLTYTYLEHCLPCCMKNLPASFCDQHHVLLSFVSLHLQLNSYYTLQVDGGISQNLNSKTMSAPNLGAMDFPALTVSGGQNGHPKFDGADLQQSTNPYLSSDKDGMIFFKSSTGPSRGATDFASTVRKLASQDSGIWKYNGNGSADDSIGSSRSSQILASKYTTGGHGKDTYSERLLHRGSTRAAPVWLETGEAVANIYSEQREEARDHARLRNVYFEQARQAYLIGNKALAKELSVKGQLHNMHMKAAHGRAQESIYRQRFVSLCCFCLDSNKVDSGEISWLILISYYGHSCNYVFKDNL 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21545787 21549295 - Lsi04G013750.1 Lsi04g01375 661424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01375 586 Pfam Domain of unknown function (DUF1771) 484 546 IPR013899 -
Lsi04g01375 586 SMART DUF1771_2 483 548 IPR013899 -
Lsi04g01375 586 CDD CUE_CID7_like 223 265 IPR041806 -
Lsi04g01375 586 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7 1 546 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01375 - - - cmo:103493901 730.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01375 Lsi-Chr4:21545787 Lsi04g02158 Lsi-Chr4:28641591 1.98E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g176 . . . . Bpe02g01566 . . . . . Cma01g01694 . . . . . Cpe06g00267 . . . . . . . Cla05g01639 Cam05g1749 Cec05g1758 Cco05g1814 Clacu05g1740 Cmu05g1625 Cre05g1752 Cone4ag1707 Cone7ag1624 Cone17ag0953 Cone20ag0297 Lsi04g01375 . . . Blo17g00269 Blo18g00255 Bda01g01353 Bda13g01583 Bpe14g00285 . Bma01g00905 Bma02g00334 . . Cmo09g00377 Cma09g00375 . Car01g01308 . . Cpe02g00299 Bhi09g03065 . . . Hepe01g1926 Mch11g0464 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004395 2 0 1 2 2 1 1 1 1 1 1 1 2 0 1 3 1 4 1 1 1 1 1 1 1 1 1 5 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01375 Lsi_Chr04 FPKM 0.476266 0.0 0.0 0.0 0.0 0.0 0.194256 0.434871 0.143631 0.0