Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01381 GTTGGCTTTGAGGATTACAATATGAGGGGAGCATTTTCTGAGGCAATTGGAAATCCATTTGATTGCGATGAATCTTTGCGAGCTGCAGAAATAGAGAGGCGGATTGAACAAGAAGCAGAGGCTGAAAAACATATACAGAAACTTCTTCTGCTTGGTGCTGGAGAGTCTGGGAAATCCACCATTTTTAAGCAGGCAAGTTCTTTTATTCTTTACCGTCATAATCTGCAATGCCGCAATGAAATAAAATTGTTGTTCCAAACTGGGTTTGATGAGGCAGAGCTAAAGAGCTATATTCCAGTCATTCATGCAAATGTGTATCAGACTATAAAAGTATTACATGATGGTTCAAAGGAGCTCTCTCAAAATGACAAAGAGTTCTCGAAGTATGTTTTATCCAGTGAAAATAAGGAAATTGGCGAGAAATTATCAGATATCGGAGGTAGATTGGATTGCCCGCGTTTGACTAGGGAGCGTGCACAGGATATAGAGACTCTTTGGAAAGATTCTGCGATTCAGGAAACGTATGCTCGTGGAAATGAACTACAGGTTCCAGATTGCACACATTATTTCATGGAAAATTTGCAAAGATTATCTGATGCAAATTACATTCCAACTAAGGAGGACGTACTCTACGCAAGAGTTCGTACAACAGGTGTTGTTGAAATCCAGTTTAGTCCCGTTGGTGAAAATAAAAAGAGCGGCGAAGTGTATAGACTCTTTGATGTTGGTGGACAGAGAAATGAGAGGAGAAAATGGATTCATCTTTTTGAAGGTGTTACAGCAAAGGTAAAAGAAAAGCCTAGACATTGGAATCTGAAAATCTACGCCACTCTCATTGATGTTTACAGAGTAACGACTGGGTCGTCGTGGATGCTCCCAGTAGCTGATGGGATACGATTTAGATTTAGGAATATGTATGATCAAACACTTTTTGAGGATGAACAGAAGAACCGAATGATGGAGACGAAGGAACTTTTTGAGTGGGTTCTGAAACAAGAGTGTTTTGAGAAAACGTCATTTATGCTTTTTCTCAACAAATTCGATATCTTCGAGAAAAAGGTTCTAAAGGTCCCTCTCACTGTGTGTGAATGGTTCAAAGATTATCAACCTGTTTCGACTGGAAAACAGGAGATCGAGCATGCCTATGAGTATAGCACAGCACCGGATCGAGTAGATCGGGTGTTTAAGGTATACAGAACTACTGCTCTTGATCAGAAACTTGTAAAGAAAACGTTCAAGCTCGTAGATGAAACTTTGAGGCGGCGAAATCTCTTCGAGGCTGGGTTTCTTGCACCTTTCATTGGTCCTATTCTTAAGAAAGGAGGAAATATGAGGAACAATTGGGAATTTTTCATTGATCTTGATGGAGGCTCACCTTATGTCTTGCCGATCGAGCCCTTTACATCTCATGGATTTGGAGGTCATCTATTTTCACATATTAGTTCATTCATGGATAATTCTCTATTTCAGTCTAGAAATTTGTATATGGCTGGAACTTTAGCACTTCAAGAAGCCTTTAATTGCTTTTCAAAGATAGCTGGTGCACTATTACTATGGTACTCAAGTACATCGACGGCAAATGTGACTCGGGAGATAGCAGATGATTTACATGGTTCAAATTCTAGAAGCTTTAACAACTTTACTGAAGTTAGGAGCATCCGTTCTGCTAGACTTGGGTCTAGAGGATTTCACTTTAGCTTTAATTTGGATAAAGAACATTCCAACATGATTTTTCTTGGCAAGATTGGCAGTTTCGCATCAAAACTCCTAGGTAAAGAAGCTGGAAGACAGCAGCTGCATCCTTTGCTCTCAGTAGCGGCTGCTTTAGTTCCTCCACTTAACAACCTGGCCAGTAGATCATCAGATATTATAGCTATTCCATTGGAGAACAGCGAATTGCAAGTGCACGGATGCATGGATCAAAAACCTTGTGAAGTTGCATATAGAACACATGCTGGCTTAACTTTTCCTGATGTGAACTGGACAAGGCATGCAATTGAACCCAAAACTGGCATTGAATTTCCCGTGATACTGGATAACATTTTGGCTGCAGAAAATAATTCCAGCTTGAGTTCAGAGGTTCTTGTTGGAACTGGATCCAGAATAATGAAAATAGTCAAAATTAAATCCTTGAAGGTCTATGCTTTTGGCTTTTATGTTCATCCAAACTCTGTCTGTGAGAAGCTTGGTCCAAAATATGCTTCTAGTTCAGCAGATGAATTAAATGAGCGCCGTGATTTTTATGAGGACCTTCTGAGGGAGGATATTAATATGACTGTCAGACTCGTGGTTAATTGCAATGGGATGAAAATCAATACTGTAAGAGATGCTTTTGAGAAATCACTTAGAGCACGATTGTTGAAGGCAAATCCAGAAACTGATTACCATTGTGTGAGGACATTTGGTTCTCTCTTCACTAAAGACATTCCATTACCTGCGGGAACGACTATCGATTTCCGACAGACAGCTGATGGACAGCTAATCACTGAAATGGGAGGCACTTTGATTGGAGCAGTACGTAGCAAGGAATTGTGTAGGGCATTCTTTGATATGTACCTTGGAGACGTTCCAGTGTCGGAGGAAACAAAAAAAGAGATCGGTAAAAATGTGGCAGGTCTTATTGGTAGATGCTGA 2634 40.21 VGFEDYNMRGAFSEAIGNPFDCDESLRAAEIERRIEQEAEAEKHIQKLLLLGAGESGKSTIFKQASSFILYRHNLQCRNEIKLLFQTGFDEAELKSYIPVIHANVYQTIKVLHDGSKELSQNDKEFSKYVLSSENKEIGEKLSDIGGRLDCPRLTRERAQDIETLWKDSAIQETYARGNELQVPDCTHYFMENLQRLSDANYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAKVKEKPRHWNLKIYATLIDVYRVTTGSSWMLPVADGIRFRFRNMYDQTLFEDEQKNRMMETKELFEWVLKQECFEKTSFMLFLNKFDIFEKKVLKVPLTVCEWFKDYQPVSTGKQEIEHAYEYSTAPDRVDRVFKVYRTTALDQKLVKKTFKLVDETLRRRNLFEAGFLAPFIGPILKKGGNMRNNWEFFIDLDGGSPYVLPIEPFTSHGFGGHLFSHISSFMDNSLFQSRNLYMAGTLALQEAFNCFSKIAGALLLWYSSTSTANVTREIADDLHGSNSRSFNNFTEVRSIRSARLGSRGFHFSFNLDKEHSNMIFLGKIGSFASKLLGKEAGRQQLHPLLSVAAALVPPLNNLASRSSDIIAIPLENSELQVHGCMDQKPCEVAYRTHAGLTFPDVNWTRHAIEPKTGIEFPVILDNILAAENNSSLSSEVLVGTGSRIMKIVKIKSLKVYAFGFYVHPNSVCEKLGPKYASSSADELNERRDFYEDLLREDINMTVRLVVNCNGMKINTVRDAFEKSLRARLLKANPETDYHCVRTFGSLFTKDIPLPAGTTIDFRQTADGQLITEMGGTLIGAVRSKELCRAFFDMYLGDVPVSEETKKEIGKNVAGLIGRC 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21614125 21625658 + Lsi04G013810.1 Lsi04g01381 661430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01381 877 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 305 430 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Lsi04g01381 877 Pfam G-protein alpha subunit 29 261 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi04g01381 877 Pfam G-protein alpha subunit 306 418 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi04g01381 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 261 IPR027417 -
Lsi04g01381 877 SMART galpha_1 25 429 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi04g01381 877 Gene3D - 90 215 IPR011025 GO:0007165
Lsi04g01381 877 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 21 262 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Lsi04g01381 877 CDD G-alpha 46 424 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi04g01381 877 Gene3D - 300 429 IPR027417 -
Lsi04g01381 877 Gene3D - 724 867 IPR016089 -
Lsi04g01381 877 SUPERFAMILY Chalcone isomerase 666 875 IPR036298 GO:0016872
Lsi04g01381 877 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 305 430 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi04g01381 877 PRINTS Alpha G protein (transducin) signature 237 254 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi04g01381 877 PRINTS Alpha G protein (transducin) signature 340 349 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi04g01381 877 PRINTS Alpha G protein (transducin) signature 47 62 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi04g01381 877 PRINTS Alpha G protein (transducin) signature 202 224 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi04g01381 877 PRINTS Plant G protein alpha subunit signature 222 237 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Lsi04g01381 877 PRINTS Plant G protein alpha subunit signature 33 42 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Lsi04g01381 877 Pfam Chalcone isomerase like 694 866 IPR016087 GO:0016872
Lsi04g01381 877 ProSiteProfiles G-alpha domain profile. 44 430 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi04g01381 877 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 21 262 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi04g01381 877 SUPERFAMILY Transducin (alpha subunit), insertion domain 89 214 IPR011025 GO:0007165
Lsi04g01381 877 Gene3D - 666 852 IPR016088 -
Lsi04g01381 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 426 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01381 K19729 GNAT3; guanine nucleotide-binding protein G(t) subunit alpha 3 - bhj:120087086 801.201
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02290 Lsi-Chr2:29458591 Lsi04g01381 Lsi-Chr4:21614125 3.25E-31 dispersed
Lsi04g01381 Lsi-Chr4:21614125 Lsi07g01155 Lsi-Chr7:17011473 3.86E-40 dispersed
Lsi04g01381 Lsi-Chr4:21614125 Lsi01g01019 Lsi-Chr1:8445038 3.57E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g171 Blo01g01439 Blo12g01033 Bda01g00643 Bda03g00121 . Bpe02g00514 . Bma01g02190 . . . . Car09g00318 . . . Cpe06g00263 . . . . . . . Cla05g01634 Cam05g1743 Cec05g1752 Cco05g1809 Clacu05g1735 Cmu05g1619 Cre05g1747 Cone4ag1703 Cone7ag1619 . . Lsi04g01381 . . . . . . . . Bpe04g00106 . . . . Cmo09g00370 Cma09g00371 . Car01g01312 . . Cpe02g00295 Bhi09g03073 Tan01g3487 . . Hepe01g1922 . . . . . . . . . . . . Cme07g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004076 2 3 1 2 2 1 1 1 1 1 1 1 0 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 8 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01381 Lsi_Chr04 FPKM 8.444145 9.859651 0.0 0.0 0.0 0.0 0.0 3.660604 3.781806 4.020578