Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01384 ATGAAGTCTGTGAAGAGGGCAGCCATGGCATTTCCTGTTGAGCTTGTAGTTTTGGTTTTTCTCTTCTGTGCTACCGTTGGTGTGGTGGACTCTGATGATGGAGCAACGTTGTTGGAGATAAAGAAATCATTCAGGGATGTGGATAATATTCTTTATGATTGGACAAGCTCACCTTCATCAGACTACTGTATATGGAGAGGTGTCACCTGTGACAATGCCACTCTCAACGTTATCTCTCTGGATTTGAGGGGGAATAGTCTTTCTGGGCAAATTCCAGATGAGATTGGTGACTGCTCTTCGTTAACAAATCTGGATTTATCGTTTAATGAGATTTATGGAGACATACCATTTTCCATTTCGAAGTTGAAGCAACTGGAAATGCTTGTTCTGAAAAATAATCGACTGATTGGGCCGATACCGTCAACCTTATCTCAGATTCCAAACTTGAAGGTCTTAGATCTGGCACTGAATAATCTTAGTGGGGAAATACCAAGACTAATTTACTGGAATGAAGTTTTGCAATATCTTGGTTTGCGTGGCAACAATTTGGTGGGCACACTCTCTCCAGATATGTGTCAGCTGACTGGTTTATGGGACCTGTCATACAATCATCTCACTGGAGAGATACCATTTAACATTGGTTTCCTTCAAGTAGCCACATTGTCCTTACAGGGTAATCAGCTATCAGGTCCCATTCCACCTGTAATCGGTCTGATGCAGGCGCTTGCTGTGCTAGATTTGAGTTGCAACATGTTAACTGGTCCAATCCCCTCTATCTTAGGGAATCTGACTTATACTGAGAAGCTGTACTTGCATAGTAACAAGCTCACTGGGTCCATTCCGGCAGAGCTTGGGAATATGACGAAGCTCCATTATCTGGAACTGAATGATAATCATCTTACTGGGAATATTCCAGCTGAGCTTGGAAAACTCACCGATTTGTTCGATCTAAATGTTGCTAATAACAATCTCGGAGGGCCTATCCCTGACAATCTTAGCTCTTGCACAAATCTCAACAGCCTAAATGTGCATGGCAACAAGTTGAATGGAACTATTCCACCGTCTTTCCAGAGGCTAGAGAGTATGACTTACTTGAATCTCTCCTCAAATGATCTACGAGGTCCTATTCCAGTTGAGCTGTCTCGTATTGGCAATTTGGATACGTTAGACATTTCAAATAACAAAATTAGTGGCACAATTTCTTCCTCCTTTGGCGATCTGGAGCATCTCCTAAAGCTAAATTTAAGTAGGAATCATTTGACGGGATTTATTCCAGCTGAATTCGGCAATCTAAGGAGTGTAATGGATATAGATATTTCACACAACCAGCTCTCTGGGTTCATTCCTCAAGAACTGAGTCAACTTCAAAATCTTCTCTCCTTGAGACTTGAAAACAACAATTTATCTGGGGACCTGACGTCACTGATGAGCTGCCTAAGTCTTACCGAATTAAATGTATCCTATAACAATCTAGCTGGTGACATTCCCACAAGCAACAACTTCTCTAGATTTTCATCTGACAGTTTCCTTGGAAATCTTGCCCTTTGTGGATATTGGAACAGCAACAACTATCCCTGTCATGAAGCTCATACGACAGAGCGAGTTACTTACTCAACTCCCAAGCTAGTGATCCTTCACATGAACATGGCCCTTCACGTTTATGAGGATATTATGAGGATGACTGAAAATTTGAGTGAAAAGTACATTATTGGATATGGAGCTTCAAGCACAGTCTACAAATGTGTACTGAAGAATTGTAAACCTGTGGCTGTCAAAAAGCTCTACTCTCATCAGCCCCATAGCTTGAAGGGATTTGAGACCGAACTGGAAACCGTGGGTAGCATCAAGCACAGAAATCTAGTCAGCCTCCAAGGATACTCCTTATCCCCCTCTGGCAATCTCCTCTTCTATGACTACATGGAGAATGGCAGTCTTTGGGATCATCTGCACGCCAACAATGCTGTGATGGAGACAGTTGATCCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCTGTAAAGAAGGCGTTTCAACTCGCTCTCCTTTGCACCAAGAGGCAGCCATCCGATCGACCAACAATGCACGAAGTAACACGCGTCATCGGGAGTCTTCTTCCCTCAGCCACAGCACTAAAGCAAACACCAACCATAACATCCATGCCCCCATCTGCAAAATCCCCTTGCTACAAGGATGAATATGCAAATCTAAAAACGCCCCACGTGCTGAACTGCCCAACCATGAGCACCTCAGACGCCCAGCTCTTCCTCAAATTCGGAGAGGAAAAGAAACTCATCAATGTCATTGGAAATGCTTACAAAATGCTTAAGCAACGAGCAAATTGCAGCATTGTGCATGTCTTACATTCTCAAGATCTAGAAGAAAGAAGCCGGTAG 2394 43.07 MKSVKRAAMAFPVELVVLVFLFCATVGVVDSDDGATLLEIKKSFRDVDNILYDWTSSPSSDYCIWRGVTCDNATLNVISLDLRGNSLSGQIPDEIGDCSSLTNLDLSFNEIYGDIPFSISKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDLALNNLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLWDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLTGPIPSILGNLTYTEKLYLHSNKLTGSIPAELGNMTKLHYLELNDNHLTGNIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPPSFQRLESMTYLNLSSNDLRGPIPVELSRIGNLDTLDISNNKISGTISSSFGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMDIDISHNQLSGFIPQELSQLQNLLSLRLENNNLSGDLTSLMSCLSLTELNVSYNNLAGDIPTSNNFSRFSSDSFLGNLALCGYWNSNNYPCHEAHTTERVTYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAVKKLYSHQPHSLKGFETELETVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHANNAVMETVDPEITATCKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIGSLLPSATALKQTPTITSMPPSAKSPCYKDEYANLKTPHVLNCPTMSTSDAQLFLKFGEEKKLINVIGNAYKMLKQRANCSIVHVLHSQDLEERSR 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21632518 21641808 - Lsi04G013840.1 Lsi04g01384 661433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01384 797 Pfam Protein kinase domain 567 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01384 797 SUPERFAMILY L domain-like 154 250 - -
Lsi04g01384 797 Gene3D Ribonuclease Inhibitor 30 195 IPR032675 -
Lsi04g01384 797 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 77 198 - -
Lsi04g01384 797 ProSiteProfiles Protein kinase domain profile. 564 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01384 797 SUPERFAMILY RNI-like 79 496 - -
Lsi04g01384 797 Gene3D Ribonuclease Inhibitor 198 527 IPR032675 -
Lsi04g01384 797 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 13 83 - -
Lsi04g01384 797 Gene3D Phosphorylase Kinase; domain 1 528 634 - -
Lsi04g01384 797 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Lsi04g01384 797 ProSitePatterns Protein kinases ATP-binding region signature. 570 593 IPR017441 GO:0005524
Lsi04g01384 797 Gene3D Transferase(Phosphotransferase) domain 1 635 716 - -
Lsi04g01384 797 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 199 538 - -
Lsi04g01384 797 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 77 198 - -
Lsi04g01384 797 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 651 753 - -
Lsi04g01384 797 SUPERFAMILY Protein kinase-like (PK-like) 536 654 IPR011009 -
Lsi04g01384 797 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 538 651 - -
Lsi04g01384 797 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 199 538 - -
Lsi04g01384 797 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 13 83 - -
Lsi04g01384 797 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 538 651 - -
Lsi04g01384 797 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 651 753 - -
Lsi04g01384 797 Pfam Leucine Rich repeat 477 493 IPR001611 GO:0005515
Lsi04g01384 797 Pfam Leucine Rich repeat 147 162 IPR001611 GO:0005515
Lsi04g01384 797 Pfam Leucine rich repeat 241 300 IPR001611 GO:0005515
Lsi04g01384 797 Pfam Leucine rich repeat 317 372 IPR001611 GO:0005515
Lsi04g01384 797 Pfam Leucine rich repeat 385 444 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01384 K20718 ER; LRR receptor-like serine/threonine-protein kinase ERECTA [EC:2.7.11.1] - csv:101214398 1185.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01384 Lsi-Chr4:21632518 Lsi05g00855 Lsi-Chr5:14265405 8.09E-23 dispersed
Lsi04g01384 Lsi-Chr4:21632518 Lsi01g00847 Lsi-Chr1:6791970 8.95E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g166 Blo01g01442 . . . . . . . . . Cma01g01701 . . . . . Cpe06g00261 . . . . . . . . . . . . . . Cone4ag1700 Cone7ag1617 . . Lsi04g01384 . . . . . . . . . . . . . . . . Car01g01317 . . Cpe02g00292 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001314 3 2 3 2 3 1 5 2 2 2 2 1 4 1 0 4 1 0 3 1 2 2 2 1 1 2 2 2 0 1 57
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83586 PF00069 Pkinase 1.80E-11 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01384 Lsi_Chr04 FPKM 0.938411 1.197473 4.410921 4.799647 13.786489 13.091885 13.908488 8.79137 8.27247 9.121257