Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01385 ATGGCGGCCGATTTAGCGCGGTTCTCTCTGTGGCCTCACCAGAGGCTCTTCTTTCACTCCGCCTCCAAATCTAATGCTTATTTGTTTGACTCCAGGCCTGGATCTCTCCCCATACTGCATCTCCCTCAGAGTCTACTACGGAAACAGTATCCACGCCGTTTTGGAAGAGGCTTGGGGCACCGTTTCGTTGTTTCAAATTCCCTTGATGCCCAGCCTCGAGCACAGAACACGGTGCTTCAACAGGAGCGGCGCGATGAGTCTTCGGTTCTTCTTGATGTCTCCGGAATGATGTGCGGTGGGTGCGTCTCCCGCGTCAAGTCGATTCTCTCGTCCGACGACCGAGTTGACTCTGTGGTGGTTAATATGTTGACTGAGACAGCGGCGATTCGGTTAAAGTCGGATGAAGTTGCTGCGGACGCTGATTCGGCGGTGAATGTGGCGGAGAGTCTGGCGCGGAGACTGACGGATTGTGGTTTTCCGACGAATTTGAGGAACTCGGAGCTTGGAGTGGCCGAGAATGTGAGAAAATGGAAGGATATGGTTGAGAAGAAACGAAGAATGCTGGTTAAGAGTCGGAATCGGGTGGCTGTTGCTTGGACTTTGGTTGCCTTGTGCTGTGGCTCACACGCATCGCATATCTTGCACCCTTTTGGGATTCACATCCACCACGGACCACTGATGGAGATACTTCATAACTCGTATGCGAAGGGTTGTTTTGCTTTGGTTGCTCTTTTAGGACCAGGACGAGAACTACTTTTTGACGGTCTGAGGGCATTCAAGAAGGGATCTCCTAATATGAACTCTCTTGTGGGTTTTGGATCAGTTGCTGCATTTATTATCAGTGCGATCTCACTTCTTAATCCTGAGCTAGACTGGGATGCCTCATTTTTTGATGAGCCGGTCATGCTTCTTGGTTTTGTGCTGCTTGGGCGCTCTCTGGAGGAAAGAGCAAGGGTTAAGGCCTCTAGTGATATGAATGAACTTTTATCATTGATATCTTCTCATTCACGACTTGTGATAACTCCATCGGAAGGCAATTCCTCTACAAATGATGTGCTTTGCTCGGATGCAATGTGCATTAAGGTGTCTACTGATGACATTCGGGTTGGAGACTCAGTTTTAGTTTTGCCAGGAGAGACTATTCCTGTGGATGGGAAGGTTCTCGCGGGAAGAAGTGTTGTAGATGAATCAATGCTTACTGGGGAATCTCTACCTGTATTTAAGGAAGCAGGCCTTATGGTCTCAGCTGGAACTGTGAACTGGGACGGCCCTTTGAGAATTGAAGCGTCTTCTACTGGCTTGAACTCAACAATCTCCAAGATTGTTAGAATGGTTGAGGATGCGCAAGGCCATGAAGCACCTATACAAAGGCTTGCAGATTCCATAGCTGGGCCATTTGTGTACACTGTATTAACTCTCTCAGCGGCAACATTTGCATTTTGGTACTTCTTTGGTACCCATATTTTTCCTGATGTTTTGATCAATGATATTGCTGGACCAGATGGAGACCCCTTGCTTTTAAGCTTGAAACTTTCAGTTGATGTCTTGGTAGTTTCTTGCCCATGTGCACTTGGACTAGCCACTCCCACAGCAATTCTCGTTGGCACCTCCCTTGGGGCTAGACGAGGACTTCTAATAAGAGGAGGAGATGTATTGGAACGTCTGGCAGGCATAGATTGTGTTGCTTTGGACAAGACAGGAACACTTACTGAAGGAAAGCCTACAGTCTCTTCTGTGGTTTCTTTTGTTTATGGAGAAGCAGAAATACTTCAAGTTGCTGCTGCAGTGGAGAAAACTGCTTCACATCCAATTGCAAAAGCTATCATAGATAAAGCAGAATCTTTGAATTTGACCATTCCAGTCACAAGAGGGCAACTGGTAGAACCAGGCTTCGGATCTTTTGCCAATGTAAATGGGCGACTAGTTGCAGTTGGTTCATTAGAATGGGTTAATGATCGATTTGAGAAAAAAGCAAGTACCTCTGATCTTAAGAATCTCGAGCATTCTGTTTATCAGTCATTAGAGGGGATATCATCTTCAAATAATTCAAAAACAGTTGTTTATGTTGGAAGCGAAGGAGAGGGTATCATTGGTGCTATTGTAGTATCTGATCGGTTGCGCTATGATGCTGAATCCACTGTTAATAGACTCCAGAAGAAGGGAATCAGAACAGTCCTCTTATCTGGAGACAGGGAAGAGGCAGTTGCAAGTGTAGCCAAGACGGTTGGAATAGAAAAGGAATTTGTTCACTCATCTTTGACTCCTCAAGACAAATCTGACCTTATTTCCACTCTGAAAACTGCCGGACATCGAGTTGCTATGGTTGGTGATGGTATAAATGATGCACCATCTTTGGCTTCTTCCGATGTTGGGATTGCTCTGCAGCTTGAATCCCATGAAAATGCTGCTTCGAATGCCGCATCCATTTTACTTCTTGGAAATAGAATATCTCAGCTTGTTGACGCAATGGAACTAGCCCAAGCAACAATGTCTAAGGTGTACCAGAATCTGTCGTGGGCAATAGCTTACAATGTTGTTGCCGTTCCAATTGCTGCTGGAGTGCTGCTCCCAGGATTTGACTTTGCAATGACTCCTTCCCTTTCAGGTAGATGCATGCTAATCTCTCCAGTTTCCACTTAA 2640 46.02 MAADLARFSLWPHQRLFFHSASKSNAYLFDSRPGSLPILHLPQSLLRKQYPRRFGRGLGHRFVVSNSLDAQPRAQNTVLQQERRDESSVLLDVSGMMCGGCVSRVKSILSSDDRVDSVVVNMLTETAAIRLKSDEVAADADSAVNVAESLARRLTDCGFPTNLRNSELGVAENVRKWKDMVEKKRRMLVKSRNRVAVAWTLVALCCGSHASHILHPFGIHIHHGPLMEILHNSYAKGCFALVALLGPGRELLFDGLRAFKKGSPNMNSLVGFGSVAAFIISAISLLNPELDWDASFFDEPVMLLGFVLLGRSLEERARVKASSDMNELLSLISSHSRLVITPSEGNSSTNDVLCSDAMCIKVSTDDIRVGDSVLVLPGETIPVDGKVLAGRSVVDESMLTGESLPVFKEAGLMVSAGTVNWDGPLRIEASSTGLNSTISKIVRMVEDAQGHEAPIQRLADSIAGPFVYTVLTLSAATFAFWYFFGTHIFPDVLINDIAGPDGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARRGLLIRGGDVLERLAGIDCVALDKTGTLTEGKPTVSSVVSFVYGEAEILQVAAAVEKTASHPIAKAIIDKAESLNLTIPVTRGQLVEPGFGSFANVNGRLVAVGSLEWVNDRFEKKASTSDLKNLEHSVYQSLEGISSSNNSKTVVYVGSEGEGIIGAIVVSDRLRYDAESTVNRLQKKGIRTVLLSGDREEAVASVAKTVGIEKEFVHSSLTPQDKSDLISTLKTAGHRVAMVGDGINDAPSLASSDVGIALQLESHENAASNAASILLLGNRISQLVDAMELAQATMSKVYQNLSWAIAYNVVAVPIAAGVLLPGFDFAMTPSLSGRCMLISPVST 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21656444 21664316 - Lsi04G013850.1 Lsi04g01385 661434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01385 879 CDD P-type_ATPase_HM 194 857 - -
Lsi04g01385 879 Gene3D - 553 826 IPR023214 -
Lsi04g01385 879 SFLD p-type atpase 545 828 IPR044492 -
Lsi04g01385 879 SUPERFAMILY Calcium ATPase, transduction domain A 356 445 IPR008250 -
Lsi04g01385 879 SUPERFAMILY Calcium ATPase, transmembrane domain M 295 556 IPR023298 -
Lsi04g01385 879 CDD HMA 91 160 IPR006121 GO:0046872
Lsi04g01385 879 SUPERFAMILY HMA, heavy metal-associated domain 87 139 IPR036163 GO:0046872
Lsi04g01385 879 Pfam Heavy-metal-associated domain 91 159 IPR006121 GO:0046872
Lsi04g01385 879 Gene3D - 573 706 IPR023299 GO:0000166
Lsi04g01385 879 ProSiteProfiles Heavy-metal-associated domain profile. 88 163 IPR006121 GO:0046872
Lsi04g01385 879 Gene3D - 81 167 - -
Lsi04g01385 879 Gene3D - 317 449 - -
Lsi04g01385 879 PRINTS P-type cation-transporting ATPase superfamily signature 775 794 - -
Lsi04g01385 879 PRINTS P-type cation-transporting ATPase superfamily signature 720 730 - -
Lsi04g01385 879 PRINTS P-type cation-transporting ATPase superfamily signature 395 409 - -
Lsi04g01385 879 PRINTS P-type cation-transporting ATPase superfamily signature 562 576 - -
Lsi04g01385 879 Pfam haloacid dehalogenase-like hydrolase 558 788 - -
Lsi04g01385 879 Pfam E1-E2 ATPase 352 542 - -
Lsi04g01385 879 PANTHER ATP7, ISOFORM B 83 878 - -
Lsi04g01385 879 ProSitePatterns E1-E2 ATPases phosphorylation site. 564 570 IPR018303 -
Lsi04g01385 879 SUPERFAMILY HAD-like 561 861 IPR036412 -
Lsi04g01385 879 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 677 859 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi04g01385 879 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 355 583 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi04g01385 879 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 266 857 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lsi04g01385 879 SFLD C1.7: P-type atpase like 545 828 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01385 K17686 copA, ctpA, ATP7; P-type Cu+ transporter [EC:7.2.2.8] - csv:101214637 1520.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00946 Lsi-Chr3:18059423 Lsi04g01385 Lsi-Chr4:21656444 4.24E-27 dispersed
Lsi03g00947 Lsi-Chr3:18067213 Lsi04g01385 Lsi-Chr4:21656444 2.86E-137 dispersed
Lsi04g01385 Lsi-Chr4:21656444 Lsi09g00270 Lsi-Chr9:2813136 5.91E-111 dispersed
Lsi04g01385 Lsi-Chr4:21656444 Lsi06g01195 Lsi-Chr6:22295824 4.34E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g165 Blo01g01443 . Bda01g00641 . . Bpe02g00510 . . . . . . Car09g00315 . . . Cpe06g00260 . . . . . . . Cla05g01629 Cam05g1738 Cec05g1746 Cco05g1803 Clacu05g1729 Cmu05g1614 Cre05g1742 . . Cone17ag0948 . Lsi04g01385 . . . . . . . . . . . . . Cmo09g00365 Cma09g00366 . . Car05g00660 . . Bhi09g03080 . . . . . . . . . . . . . . . . Cme07g00175
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010516 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01385 Lsi_Chr04 FPKM 0.0 0.0 0.167936 0.0 2.220723 2.161232 3.077144 1.203144 1.417614 0.95475