Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01386 ATGGCGACCAAGATTCTGTGGTGTCTCTTGTTTTGTGCCCTGTTCGTCTCTGTGTTTGCTGCAGCAGATTCAAATGTGACTGATAATCCTGCCGATAAACTAGTAGCTGTGCTCAACAAGAACAGAACTGCTCATAAGCTATCTGCTCTAAAAGACAATCCTGGCTTGGCATGCCTTGCTCTTCAGTATATTAAGGCGTACCAAGGGAAATGTGGAGCCGTCGGAGGTCCCGACGGAATGAAGCCTCCAAATTCCGCGTTCGTTGAAACTTTTGCTCCTAACTGTGGAGTTGTTGTCTCGTCTCTTGCTCCGATCACAGGGCGGTTGCTCGGTTGCCAGTCTAAATATGTACATGCTCCCGATGCATTTTCTGATGTTTTGATGGAGAATAATAAGAGCTTGGAGATTCTTTATTACAAGAATAACACAGAAGTTGGAGCTGCTGTGACCGGTACAGATGGGGGCTCTCCTTACTTTTGGTGTTTGTTGTTCAGCAATGGCAGCATCTCTAACAGCTTTGCCTTTGAGGGAGGAGTGGCCAAGTTAACGCGCCCCGGTTGCTACAGTGGGGCCAATGACCAATGCAGCAGAGCCGATAGCCAGTTTTCGACCACCCGTATATTGATATCAGCCTTGACATCTTTGGTTGCCATGGCATATGCCTTTGGTTTATGA 675 47.41 MATKILWCLLFCALFVSVFAAADSNVTDNPADKLVAVLNKNRTAHKLSALKDNPGLACLALQYIKAYQGKCGAVGGPDGMKPPNSAFVETFAPNCGVVVSSLAPITGRLLGCQSKYVHAPDAFSDVLMENNKSLEILYYKNNTEVGAAVTGTDGGSPYFWCLLFSNGSISNSFAFEGGVAKLTRPGCYSGANDQCSRADSQFSTTRILISALTSLVAMAYAFGL 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21671928 21674084 - Lsi04G013870.1 Lsi04g01386 661435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01386 224 SUPERFAMILY PR-1-like 27 179 IPR035940 -
Lsi04g01386 224 PANTHER OS08G0459300 PROTEIN 1 223 - -
Lsi04g01386 224 PANTHER OS08G0459300 PROTEIN 1 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01386 - - - csv:101215279 415.231
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01386 Lsi-Chr4:21671928 Lsi09g01857 Lsi-Chr9:27375303 6.19E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g163 . . . . Bpe02g01560 . . . . . . . Car09g00314 . . . . . . . . . . . Cla05g01627 Cam05g1736 Cec05g1744 Cco05g1801 Clacu05g1727 Cmu05g1612 Cre05g1740 . . . . Lsi04g01386 . . . . . Bda01g01347 . . . . . Sed05g1795 . Cmo09g00363 Cma09g00364 . . . . . Bhi09g03082 Tan01g3472 Cmetu07g0807 . . Mch11g0452 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014132 1 1 1 0 1 0 1 0 0 1 1 1 0 0 1 1 0 2 0 1 1 1 0 1 1 1 1 2 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01386 Lsi_Chr04 FPKM 2.895623 4.324353 5.046267 6.113853 21.79134 18.757036 20.555565 6.262408 5.477805 5.049893