Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01388 ATGACGATTTGGTGCTGCTTATGCTTCACCGTTGGAGAAGAAGACGAAAGGGAAAGGGAAGAGGAACTGAAGAAGAAGGAAGGTGAAATGAAACCCATGATGCGTGAGGAGGTTTTTGAGAACCAGGATGACTCTGATCGCATTGTGCTAAATGGTGATGATTCTCAAGGGATTAATCCACTTCCGATTGCTGTAGATGATGGACCTGAACGTCACGATGGTGATCGACTTAGATTGTTTGAGGATATGGTCAGAGCAATGCACGATGGCGGCGATGGTGGTGCTCATTGGGACGATGAGCTGCGCCGCGGCAGCGGCAGTGCTGGGGCTATTAATCCCTGGAACTTTTCTTTTGGAATTCTGCATCAGTCTGAAGGAGGAGAGAGTAGTAGCGCCTCGGTTTTGGCCTTGTCTTCTACGGTGGAAACTTCTGATGAGGAACGCGATCGGGATGCCCACCATAAGCGCGCTAAAGTTCACTCCAAATTCATAGTTGACGCTGACAAAGATTTGGAATCTAGTTTTGGTAGAGATGATGGGATCAATGAGAATGACACCTGTAAATCAGAAGGATTTGAAGTAAGGATGGATCTTACAGATGATTTACTGCATATGGTTTTCTCTTTCTTGGATCACATCAATCTTTGTCGAGCTGCCATAGTCTGCAGGCAGTGGCAAGCTGCTAGTGCTCATGAAGATTTCTGGAGGTGTTTGAATTTTGAAAATAGGAACATATCCATGGAACAATTTGAGGATATGTGTGGAAGATATCCAAATGCCACAGAGGTCAATATCTCTGGTGTACCTGCTGTTCACTTGCTTGCGATGAAAGCAGTTTCCTCTTTAAGAAATCTGGAGGTTTTAACTCTGGGGAGAGGACAACTGGCAGATAACTTTTTTCACGCCCTGGCTGATTGCCATTTGTTGAAGAGTTTGACTGTCAATGATTCTACGCTAGTTAATGTTACACAAGAGATACCTATAAGCCATGATAGACTGCGTCATCTTCATCTTACTAAATGTCGTGTTATACGCATATCTGTTAGATGTCCACAACTTGAAACATTGTCATTGAAGCGCAGCAACATGGCACAGGCCGTTCTTAACTGCCCCCTTCTTCGTGACCTGGATATAGGTTCTTGCCACAAGCTCTCAGATGCTGCAATTCGCTCAGCCGCTACTTCGTGCCCACAGTTGGAATCTCTTGATATGTCTAATTGTTCATGTGTTAGTGATGAGACATTACGTGAAATTTCCTCAAACTGCCCGAATCTCCAGCTTCTGAATGCATCATACTGCCCAAATATATCTTTGGAGTCTGTAAGACTGACAATGCTGACCGTGCTTAAGCTTCACAGCTGTGAGGGCATCACATCAGCTTCAATGACCGCAATATCTAGTAGTTCTGGCCTGAAGGTTTTGGAGCTTGATAATTGCAGTCTTTTGACTTCTGTTTCTCTGGATCTTCCTCATTTACAGAATATCAGACTTGTCCATTGCCGCAAATTCTCGGACTTGAGTTTACAGAGTGTTAAATTATCATCTATAATGGTCTCTAATTGTCCATCACTTCACCGGATCAACATCACTTCCAATTTACTTCAAAAATTAGTGTTAAAGAAACAAGAGAGCTTGGCCAAATTGGTTTTGCAGTGCCCTAGTTTGCTAGATGTGGACCTCACAGACTGTGAATCACTAACGAATTCTATTTGTGAGGTTTTTAGTGATGGTGGTGGATGCCCTATGTTGAAATCACTTGTTCTTGATAACTGCGAGAGTTTGACTGCTGTTCGATTCTGTAGCAGTTCTTTAGGCAGTCTTTCCCTTGTTGGTTGCCGGGCAATCACTTCACTTGAACTTCAGTGTCCTAATCTTGAACAGGTTTCTTTAGATGGCTGTGATCATCTCGAGAGAGCATCATTTTCCCCGGTTGGTCTGCGGTCACTAAATCTGGGAATCTGTCCCAAATTGAATGAATTAAAACTTGAGGCTCCTCGTATGGATTTACTTGAGTTGAAAGGTTGTGGTGGATTGTCTGAAGCAGCCATCAATTGTCCTCGTCTAACATCATTGGATGCTTCCTTTTGTGGCCAACTGAAAGATGAGTGTTTGTCTGCGACGACTGCCTCATGTCCACAGGTTGAGTCGTTAATACTGATGTCATGTCCATCGGTTGGTTCAGAGGGACTTTATTCTCTGCGATGCCTTCTGAAGTTGGTTGTGCTCGATTTATCATATACCTTTTTGATGAGCTTGCAGCCAGTCTTCGAGTCTTGTATACAACTAAAGGTAACCTTTTTGATAGATATATTGCTGTTTAGGCAATTTAGATTTTACTCAAAATATTATCATACCCCGGTCCATGATCTTTCTGTTGTATTGATGTTTTTTTTTTGCTTTGTGTTCTTAATGAAGGTATTGAAACTACAAGCATGCAAGTATTTAACTGACTCATCGCTAGAGCCTCTTTATAAGGAAGGCGCTCTTCCAGCTCTTCAAGAGTTAGACTTATCTTACGGGACACTTTGTCAGTCTGCCATAGAAGAGCTTCTTGCTTGTTGCACACACTTAACTCATGTGAGCTTGAATGGGTGTGTGAACATGCATGATCTAAATTGGGGTTGTAGCATTGGACAACTTTCCTTATCCGGCATCCCAATTCCTCTTGGTCAGGCCACTCTCGATGAGATTGAGGAACCAGTTGCACAGCCAAACCGTCTGTTACAGAACCTCAACTGTGTAGGTTGTCAGAATATTAGAAAGGTTCTCATTCCTCCAGCCGCACGTTGTTTTCATTTATCATCATTAAACCTATCCCTCTCTTCAAATCTCAAGGAAGTTGACGTCTCTTGTTACAACCTATGCTTTCTTAATTTGAGTAATTGCTGCTCTTTGGAAGTCTTGAAACTCGACTGCCCGCGGTTAACCAGTCTCTTTCTTCAGTCTTGCAACATTGAGGAAGAAGTGGTTGTAGCTGCAGTATCGAAATGTAGCATGCTCGAGACGTTGGATGTCCGCTTCTGTCCAAAGATCTCCTCTATTAGCATGGTACAACTGCGTATTGCTTGTCCGAGTTTGAAGCGGATCTTCAGCAGTCTGTCTCCAACATGA 3111 43.14 MTIWCCLCFTVGEEDEREREEELKKKEGEMKPMMREEVFENQDDSDRIVLNGDDSQGINPLPIAVDDGPERHDGDRLRLFEDMVRAMHDGGDGGAHWDDELRRGSGSAGAINPWNFSFGILHQSEGGESSSASVLALSSTVETSDEERDRDAHHKRAKVHSKFIVDADKDLESSFGRDDGINENDTCKSEGFEVRMDLTDDLLHMVFSFLDHINLCRAAIVCRQWQAASAHEDFWRCLNFENRNISMEQFEDMCGRYPNATEVNISGVPAVHLLAMKAVSSLRNLEVLTLGRGQLADNFFHALADCHLLKSLTVNDSTLVNVTQEIPISHDRLRHLHLTKCRVIRISVRCPQLETLSLKRSNMAQAVLNCPLLRDLDIGSCHKLSDAAIRSAATSCPQLESLDMSNCSCVSDETLREISSNCPNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAISSSSGLKVLELDNCSLLTSVSLDLPHLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPSLHRINITSNLLQKLVLKKQESLAKLVLQCPSLLDVDLTDCESLTNSICEVFSDGGGCPMLKSLVLDNCESLTAVRFCSSSLGSLSLVGCRAITSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLNELKLEAPRMDLLELKGCGGLSEAAINCPRLTSLDASFCGQLKDECLSATTASCPQVESLILMSCPSVGSEGLYSLRCLLKLVVLDLSYTFLMSLQPVFESCIQLKVTFLIDILLFRQFRFYSKYYHTPVHDLSVVLMFFFCFVFLMKVLKLQACKYLTDSSLEPLYKEGALPALQELDLSYGTLCQSAIEELLACCTHLTHVSLNGCVNMHDLNWGCSIGQLSLSGIPIPLGQATLDEIEEPVAQPNRLLQNLNCVGCQNIRKVLIPPAARCFHLSSLNLSLSSNLKEVDVSCYNLCFLNLSNCCSLEVLKLDCPRLTSLFLQSCNIEEEVVVAAVSKCSMLETLDVRFCPKISSISMVQLRIACPSLKRIFSSLSPT 1036
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21675063 21682316 - Lsi04G013880.1 Lsi04g01388 661437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01388 1036 Gene3D Ribonuclease Inhibitor 784 1035 IPR032675 -
Lsi04g01388 1036 Gene3D Ribonuclease Inhibitor 661 764 IPR032675 -
Lsi04g01388 1036 SUPERFAMILY L domain-like 280 639 - -
Lsi04g01388 1036 SUPERFAMILY RNI-like 794 1029 - -
Lsi04g01388 1036 MobiDBLite consensus disorder prediction 50 72 - -
Lsi04g01388 1036 PANTHER OS10G0396666 PROTEIN 143 765 - -
Lsi04g01388 1036 Gene3D Ribonuclease Inhibitor 237 363 IPR032675 -
Lsi04g01388 1036 SMART LRR_CC_2 854 883 IPR006553 -
Lsi04g01388 1036 SMART LRR_CC_2 622 652 IPR006553 -
Lsi04g01388 1036 SMART LRR_CC_2 685 710 IPR006553 -
Lsi04g01388 1036 SMART LRR_CC_2 370 395 IPR006553 -
Lsi04g01388 1036 SMART LRR_CC_2 422 442 IPR006553 -
Lsi04g01388 1036 SMART LRR_CC_2 396 421 IPR006553 -
Lsi04g01388 1036 SMART LRR_CC_2 489 514 IPR006553 -
Lsi04g01388 1036 SMART LRR_CC_2 711 736 IPR006553 -
Lsi04g01388 1036 SMART LRR_CC_2 443 468 IPR006553 -
Lsi04g01388 1036 SMART LRR_CC_2 997 1022 IPR006553 -
Lsi04g01388 1036 SMART LRR_CC_2 580 618 IPR006553 -
Lsi04g01388 1036 SMART LRR_CC_2 552 577 IPR006553 -
Lsi04g01388 1036 SMART LRR_CC_2 972 996 IPR006553 -
Lsi04g01388 1036 SUPERFAMILY F-box domain 196 245 IPR036047 GO:0005515
Lsi04g01388 1036 PANTHER OS10G0396666 PROTEIN 804 997 - -
Lsi04g01388 1036 Pfam F-box-like 200 239 IPR001810 GO:0005515
Lsi04g01388 1036 SMART fbox_2 198 238 IPR001810 GO:0005515
Lsi04g01388 1036 Gene3D Ribonuclease Inhibitor 364 511 IPR032675 -
Lsi04g01388 1036 Gene3D Ribonuclease Inhibitor 512 660 IPR032675 -
Lsi04g01388 1036 PANTHER OS10G0396666 PROTEIN 804 997 IPR044703 GO:0010252|GO:1905393
Lsi04g01388 1036 PANTHER OS10G0396666 PROTEIN 143 765 IPR044703 GO:0010252|GO:1905393
Lsi04g01388 1036 Gene3D - 193 236 - -
Lsi04g01388 1036 SUPERFAMILY L domain-like 630 886 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01388 - - - cmo:103493700 1764.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01388 Lsi-Chr4:21675063 Lsi09g01373 Lsi-Chr9:21744192 3.52E-07 dispersed
Lsi04g01388 Lsi-Chr4:21675063 Lsi08g01205 Lsi-Chr8:20592940 3.23E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01388 Lsi_Chr04 FPKM 20.542732 22.350386 24.680746 26.71788 46.622307 48.155643 44.779678 31.997015 35.297569 31.509394