Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01389 ATGATGATTGCTTACTTGGAACCGTTTCTACATGACACCGATTCCCGCCGGCAACACGACGGGTCCTCTCTGTGCGAAGCTCTAGAGCTTCAAGGCGGCGTCAGTACTGATTCACGGGACACCGCTTTAGCCGGTAAGGATTTTGGGGGGCTACATTCCATAACTCCGTTGGCTTTGGTGACTCCAGCTGGCGCCGATGACGTGGCGAAGGTAGTGAAATCGGTCGTACAATCATCTAATCTAACGGTGGCAGCAATGGGTAACGGCCACTCAATCAACGGCCAAGCGATGGCGGATGGAGGATTGGTTGTGGACATGCGTGCCATGGGGGATCATTTACGTGTCGTCACGATTAACGGATTATCCTATGCCGACGTGTCAGGAGGGGCATTATGGGAAGACGTCTTGAAACGTTGCGTTTCAGCTTACGGATTGGCTCCTAGGTCATGGACGGATTACCTTAGCTTAACCGTCGGCGGGACACTGTCTAACGCCGGCGTTAGTGGCCAGGCTTTCCGGTACGGCCCACAAATATCCAACGTCGCTGAATTGGAAGTCGTCACTGGAAAAGGCGACACTCTAATTTGCTCAGAAAATGAAAATTCAGAATTATTTTTTAGCGTTCTAGGTGGATTGGGTCAGTTTGGAATTATCACAAGAGCTCGTGTTTTGCTTCAGCCAGCTCCTGATATGGTGAGATGGATTAGATTGGTTTATGACGACTTCGAAAGGTTCACTCATGATGCTGAATCCTTAGTACGACGGCCGGAAGGCGACTCGTTTGATTACGTGGAAGGCTTCGTTTTCTCCAACAACGATGACCCATTAACCGGAAGACCGACAGTGCCATTGGATTCCAATACTGTCTTCGACTCGTGTCATTTACCGGAAACCGCTGGTTCGGTTCTCTACTGTCTGGAAGTCGCCGTCCATTACCGGAAAAATGACCAAGTCTCAACCGTCGACATGAGACACACACACAATGTTGAGAGGTTGCTGAGTGGGCTTGGTTATGTAAAGGCGCTGAAATTCCAGGTGGACGTCAGTTACATACAATTCTTGTCACGTGTGAAGCGTGCGGAAGAGGAAGCAATCGCCAATGGCGTTTGGGATGCTCCTCATCCTTGGCTTAACCTCTTCGTGTCCAAAGCTGACATCGCTGATTTTGATCGTGTGGTCTTCAAGACCCTCCTCAAAAATGGGGTCGTGGTGTTACCAAAAGGAGAAGTGTTGTACCTAGTGGCATTACTACGATTCACTCCCCCGAACCCGAAACCAGCATTGGTTGATAAATTAGTGGAACAAAATCGAGAAATTATCAAAATATGCAATGTGAATTGCATTGACTTCAAACTGTACTTGCCACACTACCATTCAGAAGAGGAGTGGAAGCTTCACTTTGGGAATCAATGGAGTAGGTTTGTGGAGAGAAAAGCCTCGTTTGATCCAATGGCCATCCTTGCTCCGGGTCAAAAGATCTTCACTAGAATTCTACGTAAACATTAA 1506 48.27 MMIAYLEPFLHDTDSRRQHDGSSLCEALELQGGVSTDSRDTALAGKDFGGLHSITPLALVTPAGADDVAKVVKSVVQSSNLTVAAMGNGHSINGQAMADGGLVVDMRAMGDHLRVVTINGLSYADVSGGALWEDVLKRCVSAYGLAPRSWTDYLSLTVGGTLSNAGVSGQAFRYGPQISNVAELEVVTGKGDTLICSENENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRLVYDDFERFTHDAESLVRRPEGDSFDYVEGFVFSNNDDPLTGRPTVPLDSNTVFDSCHLPETAGSVLYCLEVAVHYRKNDQVSTVDMRHTHNVERLLSGLGYVKALKFQVDVSYIQFLSRVKRAEEEAIANGVWDAPHPWLNLFVSKADIADFDRVVFKTLLKNGVVVLPKGEVLYLVALLRFTPPNPKPALVDKLVEQNREIIKICNVNCIDFKLYLPHYHSEEEWKLHFGNQWSRFVERKASFDPMAILAPGQKIFTRILRKH 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21699031 21702924 - Lsi04G013890.1 Lsi04g01389 661438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01389 501 Pfam FAD binding domain 56 196 IPR006094 GO:0050660
Lsi04g01389 501 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 229 494 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lsi04g01389 501 ProSiteProfiles PCMH-type FAD-binding domain profile. 52 228 IPR016166 GO:0071949
Lsi04g01389 501 PANTHER GULONOLACTONE OXIDASE 10 498 - -
Lsi04g01389 501 SUPERFAMILY FAD-binding/transporter-associated domain-like 32 227 IPR036318 GO:0050660
Lsi04g01389 501 Gene3D - 232 453 IPR016170 -
Lsi04g01389 501 PANTHER CYTOKININ DEHYDROGENASE 7 10 498 - -
Lsi04g01389 501 Gene3D - 106 230 IPR016169 -
Lsi04g01389 501 SUPERFAMILY FAD-linked oxidases, C-terminal domain 229 495 IPR016164 GO:0003824|GO:0050660
Lsi04g01389 501 Gene3D - 44 494 IPR016167 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01389 K00279 CKX; cytokinin dehydrogenase [EC:1.5.99.12] - csv:101217899 885.945
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01389 Lsi-Chr4:21699031 Lsi08g01364 Lsi-Chr8:21946512 2.59E-140 dispersed
Lsi04g01389 Lsi-Chr4:21699031 Lsi06g00282 Lsi-Chr6:3219410 7.18E-117 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g160 Blo01g01447 Blo12g01030 Bda01g00639 Bda03g00126 Bpe02g01249 Bpe02g00507 Bma04g00113 Bma01g02195 . . Cma01g01702 . Car09g00311 . . . Cpe06g00257 . . . . . . . Cla05g01625 Cam05g1735 Cec05g1743 Cco05g1800 Clacu05g1725 Cmu05g1609 Cre05g1738 Cone4ag1698 Cone7ag1614 Cone17ag0943 Cone20ag0286 Lsi04g01389 . . . . . Bda01g01004 . . Bpe04g00111 . . Sed05g1792 Cmo01g01809 Cmo09g00362 Cma09g00363 . Car01g01320 . . Cpe02g00289 Bhi09g03084 Tan01g3470 Cmetu07g2288 . Hepe01g1915 Mch11g0450 . . . . . . . . . . . Cme07g00178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004654 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01389 Lsi_Chr04 FPKM 0.194021 0.0 0.514565 0.435406 3.478343 2.848241 3.173209 0.0 0.0 0.0