Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01391 ATGGCTATAGAAATGGAGGCATCTCTATCAGGGGACTCAGGTCCCAGCTCAGAAGCAGGTCCTTCCCACTCCCACCCCCCCGGACCTCACCGTTTCCCTCTTGCCGCTCAGCCGGAGATTATGCGAGCAGCAGAAAAGGACGATCAGTACGCCTCGTTTGTTTATGATGCTTGTCGCGACGCTTTCCGCCACCTCTTTGGCGCTCGGCTTGCCGTGGCATATCAGAAAGAGCTCAGGAATATTTGGGAATTTTTCTTGCTCTTGCATTATGATGAAACAAAGCTTCTAGGACAGATGTTGTATTATGTGTTAACAACTGGGTCAGGACAGCAAACACTTGGTGAAGAATATTGTGATATCAATCAGGTGGATAAAGATTTGATTCCTATGGGTATTTGGTATAGCTTATCTCAAGCGAATGACAATTACTCTAGAGTAGCTTCTCGTGGCATCATGCTTGCTGATTCTCTGTCTGACGAGTTCTATGGAGAGAATGCATCAGGAGACACGTCTTCTCAGTCTTCAGTTACCATGGAAATTCAACCTTCTTCAACCCCAGGGTCTGCTTCCTACTTAATGAGATTGAGGGCAAAAATTAATCGATGGTGGCTGCAAACAGTTCGATGCTGGCCTTCGGTTTTGCCTATAGTTCGTGAATTTTTGCAGTTGGCTCTTCGTACAAACCTCATGTTTTTCTATTTTGAAGGATTGTATTATCATATATCCAAACGAGCTGCAGGCATTCGATATGTGTTCATTGGAAAGCCATCTAATCAAAGACCCAGGTTTTGGACACAAACTGACTCATCTTTCAAATTTATTTTTCTGAATTTCAAACGGAGTTTTCTTTTGAGTAGCAAGTCTATATACCAAATACTTGGAGTATTTTTACTGATTCAACTTTGCATCATCGCTGCTGAAGGCTTAAGACGTAGTAGTTTATCATCCGTTTCAAGTTCAATTAACCCGACATCCTTTGGAGCAAATCCTAGTTCATCAGGGTCAGACGGCTTGTCCTGTGAGATTAGTCGAGGTGCACGTCGTGGTCTGCCTGTTTTAAACGAGGAAGGTAATTTGATATCGGTTGATGGTGACTCTGGAAACTGGGTCTCTGATCCTTCACACTCTGAGGTACCATTCAATTGCACTGACAAGAATATTCAAGTTTTCTTCATTTTGCAGTACTTTTATAATACAGGCAGTGGAATAAGTAAATGCACGCTGTGTCTGAGTAATCGCCAACACCCAACTGCTACACCTTGTGGCCATGTATTCTGCTGGAACTGCATCATGGAATGGTGCAATGAAAAACCTGAATGCCCGCTTTGCAGAACTCCCATTAATCATTCAAGCTTAGTGTGTCTATATCATTCAGATTTCTAA 1383 43.02 MAIEMEASLSGDSGPSSEAGPSHSHPPGPHRFPLAAQPEIMRAAEKDDQYASFVYDACRDAFRHLFGARLAVAYQKELRNIWEFFLLLHYDETKLLGQMLYYVLTTGSGQQTLGEEYCDINQVDKDLIPMGIWYSLSQANDNYSRVASRGIMLADSLSDEFYGENASGDTSSQSSVTMEIQPSSTPGSASYLMRLRAKINRWWLQTVRCWPSVLPIVREFLQLALRTNLMFFYFEGLYYHISKRAAGIRYVFIGKPSNQRPRFWTQTDSSFKFIFLNFKRSFLLSSKSIYQILGVFLLIQLCIIAAEGLRRSSLSSVSSSINPTSFGANPSSSGSDGLSCEISRGARRGLPVLNEEGNLISVDGDSGNWVSDPSHSEVPFNCTDKNIQVFFILQYFYNTGSGISKCTLCLSNRQHPTATPCGHVFCWNCIMEWCNEKPECPLCRTPINHSSLVCLYHSDF 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21723598 21729571 + Lsi04G013910.1 Lsi04g01391 661440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01391 460 Pfam Zinc finger, C3HC4 type (RING finger) 404 449 - -
Lsi04g01391 460 PANTHER PEROXISOME BIOGENESIS FACTOR 10 28 457 - -
Lsi04g01391 460 SUPERFAMILY RING/U-box 401 449 - -
Lsi04g01391 460 ProSiteProfiles Zinc finger RING-type profile. 406 444 IPR001841 -
Lsi04g01391 460 ProSitePatterns Zinc finger RING-type signature. 421 430 IPR017907 -
Lsi04g01391 460 SMART ring_2 406 443 IPR001841 -
Lsi04g01391 460 MobiDBLite consensus disorder prediction 164 184 - -
Lsi04g01391 460 MobiDBLite consensus disorder prediction 1 33 - -
Lsi04g01391 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 456 IPR013083 -
Lsi04g01391 460 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 28 457 - -
Lsi04g01391 460 Pfam Pex2 / Pex12 amino terminal region 47 312 IPR006845 -
Lsi04g01391 460 CDD RING-HC_PEX10 405 444 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01391 K13346 PEX10; peroxin-10 - csv:101214158 634.024
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01391 Lsi-Chr4:21723598 Lsi11g01548 Lsi-Chr11:23828273 1.23E-09 dispersed
Lsi04g01391 Lsi-Chr4:21723598 Lsi01g00319 Lsi-Chr1:2821120 2.02E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g148 . . . . Bpe02g01557 . . . . . Cma01g01704 . Car09g00310 . . . Cpe06g00394 . . . . . . . Cla05g01808 . . . . . . . . Cone17ag0941 Cone20ag0284 Lsi04g01391 . . . . . Bda01g01345 . . . Bma01g00912 . . Cmo01g01807 Cmo09g00361 Cma09g00362 . Car01g01322 . . Cpe02g00287 Bhi09g02373 . . . . . . . . . . . . . . . . Cme07g00180
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006593 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01391 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0