Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01392 ATGGATGTGAACGGCAATAAACCTTTGAAAGTTGTTCGAAGAAGTACGTCTCAGAAGGAAACTGAAAATGGAGGTCAAGTTGTGGTTGAGGTTAGTAGCGTTGTGTCTTCCAAAGAAACCAGAGATGAAAATGTCTACTCTGTACCGAAGCAAAACAGAGTCGATTCACAGACCAAGGAGCCCACCGATTCGAGCATTGGCTATGGCTACGATTCACAACTCCCTCCCATTGCGAATAAGCCACCGAAAATCCCAAGTTCAAATGGAACCCTCACGCCCAGAAGATCTCTCAAAAGATCAATCCTCTCGAAACCCAAATCCAGATTTGGGGAACAGCCAGGTTATATCGATTCAGAGATGTTTGAGGAGAATCATTTGTCGTTGAGAGATCAAATCGGTGCAACTTCATCCAGAAGCTCTACTCTCAACACGCCGAAGGCCAAACCTGAGGAAGAAGATGATGAGGATATCTTCAAGATAGAGCAGTTGGATAATAAGCACAAGAAAGTGAAGGTGAAGACAGTGATTAAGTGGGTTGGAGTTTTTTGCATCATTGGTTGTTTGGTGGCTAGTTTGACTGTTAACCCTTTGAAGAATCGCTTCCTTTGGGGATTGAGGGTTTGGAAATGGTGTTTACTTGCAACTGTGATTTTGTGTGGAATGATATTTACAAATTGGGTTATGAATGTGATTGTATTTTTGATCGAGAGGAACTTTTTGCTTAAGAAAAAAGTACTTTATTTTGTTCATGGCTTGAAGAAGAGTGTCCAAGTGACCCTTTGGTTGACATTGGTTCTTGCTACATGGGGGTCCTTGTTCGATCGGAGAAACCATACGATTCCAAGTTCGAGGATCACTATGAAGATTTTGGATGCTGTTACATGGACTCTGGTTAGCCTTCTTATAGGGGCATTCCTGTGGTTGATAAAAACATTGTTGCTGAAAATACTGGCCTCCAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACTCTCTCGAGGCCTCCTTTAATGGAGGGAGCTGAAACTACTTCCAAGTCCAGCAGTGGTAGATTGAGTTTGAAGAGTAAAAAATCAGACCGTAAAAAAGTGATTGACATGGGAAAGATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTATTGGTTGATGCAGTTACTAGTTCGGAGATGTCGATCTCACAAATACTCGATGAAAGCTACCAAGATGTCGCTGACGGTGAGATCGCAGACGAGATGGAAGTTGCCAGAGCCGCTGCTTATAAGATATTCAACAATGTTGCTCTTCGTGGAAACAAGTTCATAGAGGAAGAGGATCTTCTGAGATTTATGATCAAAGAAGAAGTTGATCTTGTGTTACCACACTTTGAGGTAGATGAGACAAGGAAGATTGACAGGAAAGCTCTAACAAATTGGGTGGTGAGACCTTGTATCTATTGTTTATCTGATACACAAGTCTGGAATCATTCTTATATAAACAAAAACGAGAATCATTCTCATTTGCCGAAGTGTGCCGACAATGTTCTATGGCACGTAGTAACTTCTTTTTGTGCAGGTGAAGTAACCGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACTACCAAAGTACTTCTCTTCCTTCTAACTCAGCTTGCAGTGGCAACTTTCATGTTTGGAAACAGTTGCAAGACTACATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGATGTCGGGGACCGTTGTGTTGTCGATGGCGTCCAGCTGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCAACAATGAGAAGATTTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAACTATTACAGAAGTCCAGACATGGGCGACACCATCGAATTCTCAATCGGTTTCGCAACACCAATGGAGAGGATTGGGGTCATGAAAGAGAAAATAAAGAGGTATTTGGAGAAGAATCCACAACACTGGCATCCAAATCATAGTGTGGTAGTGCAGGAGATCGAAAACGTGAATAAGATAAAGATCGCTCTTTATACGAACCACACCATGAATTTTCAAGACTGGAGTGAGAAGAACCGTCGAAGAACGGAGCTCGTGATGGAGTTGAAGAGAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTTCATCTCTTCCCAGTTGAGGGCACTGAAGTCTACAGAAGATCTTAA 2265 41.59 MDVNGNKPLKVVRRSTSQKETENGGQVVVEVSSVVSSKETRDENVYSVPKQNRVDSQTKEPTDSSIGYGYDSQLPPIANKPPKIPSSNGTLTPRRSLKRSILSKPKSRFGEQPGYIDSEMFEENHLSLRDQIGATSSRSSTLNTPKAKPEEEDDEDIFKIEQLDNKHKKVKVKTVIKWVGVFCIIGCLVASLTVNPLKNRFLWGLRVWKWCLLATVILCGMIFTNWVMNVIVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLTLVLATWGSLFDRRNHTIPSSRITMKILDAVTWTLVSLLIGAFLWLIKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRPPLMEGAETTSKSSSGRLSLKSKKSDRKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQILDESYQDVADGEIADEMEVARAAAYKIFNNVALRGNKFIEEEDLLRFMIKEEVDLVLPHFEVDETRKIDRKALTNWVVRPCIYCLSDTQVWNHSYINKNENHSHLPKCADNVLWHVVTSFCAGEVTAVIWLLLMEIATTKVLLFLLTQLAVATFMFGNSCKTTFEALIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKIYYPNSVLATKPITNYYRSPDMGDTIEFSIGFATPMERIGVMKEKIKRYLEKNPQHWHPNHSVVVQEIENVNKIKIALYTNHTMNFQDWSEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFPVEGTEVYRRS 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21731486 21734606 - Lsi04G013920.1 Lsi04g01392 661441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01392 754 Gene3D - 586 635 IPR023408 -
Lsi04g01392 754 MobiDBLite consensus disorder prediction 349 370 - -
Lsi04g01392 754 MobiDBLite consensus disorder prediction 49 69 - -
Lsi04g01392 754 MobiDBLite consensus disorder prediction 83 97 - -
Lsi04g01392 754 PIRSF Memb_At2g17000 517 754 IPR016688 -
Lsi04g01392 754 PIRSF Memb_At2g17000 12 494 IPR016688 -
Lsi04g01392 754 MobiDBLite consensus disorder prediction 349 363 - -
Lsi04g01392 754 SUPERFAMILY Sm-like ribonucleoproteins 575 635 IPR010920 -
Lsi04g01392 754 MobiDBLite consensus disorder prediction 18 42 - -
Lsi04g01392 754 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 25 742 - -
Lsi04g01392 754 Pfam Mechanosensitive ion channel 531 732 IPR006685 GO:0016020|GO:0055085
Lsi04g01392 754 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 25 742 IPR016688 -
Lsi04g01392 754 MobiDBLite consensus disorder prediction 1 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01392 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101217197 1069.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01392 Lsi-Chr4:21731486 Lsi10g00810 Lsi-Chr10:11068664 4.06E-149 dispersed
Lsi04g01392 Lsi-Chr4:21731486 Lsi04g01394 Lsi-Chr4:21742514 0 proximal
Lsi04g01392 Lsi-Chr4:21731486 Lsi06g00313 Lsi-Chr6:3564957 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g02054 . 139 631 Mechanosensitive Ion Channel Family AT4G00290 52.7 8.1e-137 484.2
Lsi05g00779 . 67 732 Mechanosensitive Ion Channel Family AT5G10490 50.9 1.8e-163 573.2
Lsi08g01024 . 10 643 Mechanosensitive Ion Channel Family AT1G58200 50.9 3.1e-163 572.4
Lsi05g00779 . 43 510 Mechanosensitive Ion Channel Family AT1G58200 56.7 1.7e-145 513.5
Lsi10g00810 . 43 963 Mechanosensitive Ion Channel Family AT1G53470 53.5 8.5e-254 873.6
Lsi10g00812 CCT 16 770 Mechanosensitive Ion Channel Family AT1G53470 51.2 3.2e-213 738.8
Lsi10g00810 . 43 961 Mechanosensitive Ion Channel Family AT3G14810 51.5 8.4e-243 837.0
Lsi10g00812 CCT 17 770 Mechanosensitive Ion Channel Family AT3G14810 51.5 1.6e-209 726.5
Lsi10g00810 . 43 963 Mechanosensitive Ion Channel Family AT1G78610 57.4 1.7e-275 945.7
Lsi10g00812 CCT 15 770 Mechanosensitive Ion Channel Family AT1G78610 55.5 1.3e-235 813.1
Lsi10g00810 . 226 963 Mechanosensitive Ion Channel Family AT2G17000 58.4 3.7e-230 795.0
Lsi10g00812 CCT 167 769 Mechanosensitive Ion Channel Family AT2G17000 60.2 5.0e-203 704.9
Lsi11g01224 CCT 264 1022 Mechanosensitive Ion Channel Family AT2G17000 50.3 8.5e-203 704.1
Lsi10g00810 . 1 676 Mechanosensitive Ion Channel Family AT2G17010 50.6 1.2e-162 570.5
Lsi10g00812 CCT 147 536 Mechanosensitive Ion Channel Family AT2G17010 61.2 5.8e-138 488.4
Lsi04g01392 . 72 742 Mechanosensitive Ion Channel Family AT5G12080 53.7 1.4e-182 636.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01392 Lsi_Chr04 FPKM 2.815981 2.329156 3.092883 2.125864 1.332935 2.121248 1.735059 0.0 0.16016 0.0