Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01392 ATGGATGTGAACGGCAATAAACCTTTGAAAGTTGTTCGAAGAAGTACGTCTCAGAAGGAAACTGAAAATGGAGGTCAAGTTGTGGTTGAGGTTAGTAGCGTTGTGTCTTCCAAAGAAACCAGAGATGAAAATGTCTACTCTGTACCGAAGCAAAACAGAGTCGATTCACAGACCAAGGAGCCCACCGATTCGAGCATTGGCTATGGCTACGATTCACAACTCCCTCCCATTGCGAATAAGCCACCGAAAATCCCAAGTTCAAATGGAACCCTCACGCCCAGAAGATCTCTCAAAAGATCAATCCTCTCGAAACCCAAATCCAGATTTGGGGAACAGCCAGGTTATATCGATTCAGAGATGTTTGAGGAGAATCATTTGTCGTTGAGAGATCAAATCGGTGCAACTTCATCCAGAAGCTCTACTCTCAACACGCCGAAGGCCAAACCTGAGGAAGAAGATGATGAGGATATCTTCAAGATAGAGCAGTTGGATAATAAGCACAAGAAAGTGAAGGTGAAGACAGTGATTAAGTGGGTTGGAGTTTTTTGCATCATTGGTTGTTTGGTGGCTAGTTTGACTGTTAACCCTTTGAAGAATCGCTTCCTTTGGGGATTGAGGGTTTGGAAATGGTGTTTACTTGCAACTGTGATTTTGTGTGGAATGATATTTACAAATTGGGTTATGAATGTGATTGTATTTTTGATCGAGAGGAACTTTTTGCTTAAGAAAAAAGTACTTTATTTTGTTCATGGCTTGAAGAAGAGTGTCCAAGTGACCCTTTGGTTGACATTGGTTCTTGCTACATGGGGGTCCTTGTTCGATCGGAGAAACCATACGATTCCAAGTTCGAGGATCACTATGAAGATTTTGGATGCTGTTACATGGACTCTGGTTAGCCTTCTTATAGGGGCATTCCTGTGGTTGATAAAAACATTGTTGCTGAAAATACTGGCCTCCAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACTCTCTCGAGGCCTCCTTTAATGGAGGGAGCTGAAACTACTTCCAAGTCCAGCAGTGGTAGATTGAGTTTGAAGAGTAAAAAATCAGACCGTAAAAAAGTGATTGACATGGGAAAGATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTATTGGTTGATGCAGTTACTAGTTCGGAGATGTCGATCTCACAAATACTCGATGAAAGCTACCAAGATGTCGCTGACGGTGAGATCGCAGACGAGATGGAAGTTGCCAGAGCCGCTGCTTATAAGATATTCAACAATGTTGCTCTTCGTGGAAACAAGTTCATAGAGGAAGAGGATCTTCTGAGATTTATGATCAAAGAAGAAGTTGATCTTGTGTTACCACACTTTGAGGTAGATGAGACAAGGAAGATTGACAGGAAAGCTCTAACAAATTGGGTGGTGAGACCTTGTATCTATTGTTTATCTGATACACAAGTCTGGAATCATTCTTATATAAACAAAAACGAGAATCATTCTCATTTGCCGAAGTGTGCCGACAATGTTCTATGGCACGTAGTAACTTCTTTTTGTGCAGGTGAAGTAACCGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACTACCAAAGTACTTCTCTTCCTTCTAACTCAGCTTGCAGTGGCAACTTTCATGTTTGGAAACAGTTGCAAGACTACATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGATGTCGGGGACCGTTGTGTTGTCGATGGCGTCCAGCTGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCAACAATGAGAAGATTTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAACTATTACAGAAGTCCAGACATGGGCGACACCATCGAATTCTCAATCGGTTTCGCAACACCAATGGAGAGGATTGGGGTCATGAAAGAGAAAATAAAGAGGTATTTGGAGAAGAATCCACAACACTGGCATCCAAATCATAGTGTGGTAGTGCAGGAGATCGAAAACGTGAATAAGATAAAGATCGCTCTTTATACGAACCACACCATGAATTTTCAAGACTGGAGTGAGAAGAACCGTCGAAGAACGGAGCTCGTGATGGAGTTGAAGAGAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTTCATCTCTTCCCAGTTGAGGGCACTGAAGTCTACAGAAGATCTTAA 2265 41.59 MDVNGNKPLKVVRRSTSQKETENGGQVVVEVSSVVSSKETRDENVYSVPKQNRVDSQTKEPTDSSIGYGYDSQLPPIANKPPKIPSSNGTLTPRRSLKRSILSKPKSRFGEQPGYIDSEMFEENHLSLRDQIGATSSRSSTLNTPKAKPEEEDDEDIFKIEQLDNKHKKVKVKTVIKWVGVFCIIGCLVASLTVNPLKNRFLWGLRVWKWCLLATVILCGMIFTNWVMNVIVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLTLVLATWGSLFDRRNHTIPSSRITMKILDAVTWTLVSLLIGAFLWLIKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRPPLMEGAETTSKSSSGRLSLKSKKSDRKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQILDESYQDVADGEIADEMEVARAAAYKIFNNVALRGNKFIEEEDLLRFMIKEEVDLVLPHFEVDETRKIDRKALTNWVVRPCIYCLSDTQVWNHSYINKNENHSHLPKCADNVLWHVVTSFCAGEVTAVIWLLLMEIATTKVLLFLLTQLAVATFMFGNSCKTTFEALIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKIYYPNSVLATKPITNYYRSPDMGDTIEFSIGFATPMERIGVMKEKIKRYLEKNPQHWHPNHSVVVQEIENVNKIKIALYTNHTMNFQDWSEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFPVEGTEVYRRS 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21731486 21734606 - Lsi04G013920.1 Lsi04g01392 661441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01392 754 Gene3D - 586 635 IPR023408 -
Lsi04g01392 754 MobiDBLite consensus disorder prediction 349 370 - -
Lsi04g01392 754 MobiDBLite consensus disorder prediction 49 69 - -
Lsi04g01392 754 MobiDBLite consensus disorder prediction 83 97 - -
Lsi04g01392 754 PIRSF Memb_At2g17000 517 754 IPR016688 -
Lsi04g01392 754 PIRSF Memb_At2g17000 12 494 IPR016688 -
Lsi04g01392 754 MobiDBLite consensus disorder prediction 349 363 - -
Lsi04g01392 754 SUPERFAMILY Sm-like ribonucleoproteins 575 635 IPR010920 -
Lsi04g01392 754 MobiDBLite consensus disorder prediction 18 42 - -
Lsi04g01392 754 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 25 742 - -
Lsi04g01392 754 Pfam Mechanosensitive ion channel 531 732 IPR006685 GO:0016020|GO:0055085
Lsi04g01392 754 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 25 742 IPR016688 -
Lsi04g01392 754 MobiDBLite consensus disorder prediction 1 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01392 Lsi-Chr4:21731486 Lsi10g00810 Lsi-Chr10:11068664 4.06E-149 dispersed
Lsi04g01392 Lsi-Chr4:21731486 Lsi04g01394 Lsi-Chr4:21742514 0 proximal
Lsi04g01392 Lsi-Chr4:21731486 Lsi06g00313 Lsi-Chr6:3564957 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01392 K22048 - csv:101217197 1069.68