Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01394 ATGGATTTGAACGGCAATAAACCTTTGAAAGCTGTTCGAGGAAGTTCGTCTCAGAATGAAAGTGAAAATGGAGGCCAAGTAGTGGTTGAAATTAGCAGCGTTGTGTCTTCCAAAGAAATCAGAGATGACAATGGCTACTCTGTACCGAAGCAAAACAGAGTCGATTCACAGACCAAAGAGCCGACCGATTCTTGCATTGCCCATGGCCACGATTCAAATCTCCCTCCCACTGCGAATAAGCCACCGGAAATCCCCAGTTCAAAGGGAACCCTCACGTCCACAAGATCTCTCAAAAGATCAATCCCATCGAGACCCAAATCAAGATTTGGGGAACAGCCACGTTTCATCGATTCAAATATGTTTGAGGAGAATCATTTGTCGTTGAGGGAACAAACCGGTGCAACTTCATCCAGAAGCTCTGCTCCCAGCACGACGAAGGCCCAACCTGAGGAAGAAGATGATGAAGAAAAGACAGAGCCGTTGAACAAAAAGCACAAGAAAGTTAAGAAAGTTAAGAAAGTTAAGGTGAAGACATTGATTAAGTTGGTTGGATTTGTTTTCATAATTGGTTGCTTAGTGGCTAGCTTGACTGTTAAACGTTTGAAGAATTGCTTCTTTTGGGGATTGAGGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTATGCATATTGTTGTCAGTTTGATTGAGGGGAACTTTTTGCTTAAGAAAAAAGTGCTTTATTTTGTTCATGGATTGAAGAAGAGTGTCCAAGTGACCATTTGGTTGGCATTGGTTCTTGTTACATGGGTGTCGCTGTTCGATCGGAGAAACCATAGGAATTCGAATTTGGGAATCATTGGGAAGATTTTGGATACTATTACATTGACTCTGATAGCCCTTCTTGTAGGGGCATTCCTGTGGTTGGTAAAAACATTGTTGTTGAAAATACTGGCCTCCAAGTTCCATAAGGACCAATTTTTCGACAGAATTCAGGAATTCATTTTCCATCATCATGTTCTACAAACCCTCTCGAGGTCTCCATTAATGGAGGGGGCTGGAAGTCGTAACAAGTTCAACTGTTGTCGATTTAGTTTGGAGAGTAAAAAATCAGACCATAAAAAGGTGATTGGCATGGGAGGGATTCACCGGCTGCAGCGAGAGAAGGTAACGGCTTGGACAATGAAGGTGTTGATCGAGGCAGTTATAAGTTCAGAGATGTCGATCTCACAAACGCTCGATGAAAGCTACCACAATATTGCTGATGGTGAGATCACCGATGAAATGGAAACTGCTAGTGCTGTTGCCCACAAGATCTTAGAAAATGTTGCTCTTGGAAATATGTTCATACAAGAAGAGGATCTTAAGAGATTTATGGTCAAAGAAGAAGTTGATCTTGTGTTACCACACTTTGAGGTAGATGAGACAAGGAGGATTGACGAGAAGGCTCTAACAAAATGGGTGGTGAAGGTTTATCAAGAGAGGAAAACTCTAGTACATGCCTTGAATGACACTAAAACAGCTGTGAAGCAATTGAATAATTTGGTAACAGCCATTCTTATAATAGTAACGGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACATCCAAAGTACTCGTTTTCCTTCTATCTCAACTTGCAGTGGCAGCTTTCATGTTCGGAAGCTCTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGACGTCGGGGACCGTTGTGCCGTCGATGGCGTCCATCTGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCAACAATGAGATGGTTTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAACTACTACAGAAGTCCAGACATGTGCGACACCATCGAATTCTCGATTAGTTTCGCAACACCATTGGAGAGGATTGGAGTCATGAAAGAGAAAATAAAGAGGTATTTGGAGAAGAATCCACAACACTGGCATCCAAATCATAGTGTGGTGGTGAAAGAGATCGAAAACGTGAATAAGGTAACAATCGCTCTTTATACGAACCACACCATGAATTTTCAAGACTGGAGTGAGAAGAGCCGACGAAGATCGGAGCTCGTGATGGAGCTGAAGAGAATTTTTGAAGAACTGAAGATCAACTACGATCTGCTGCCTCAAACAGTTCATCTCTTTCCAGTTCAGGAGCAGTAA 2217 41.81 MDLNGNKPLKAVRGSSSQNESENGGQVVVEISSVVSSKEIRDDNGYSVPKQNRVDSQTKEPTDSCIAHGHDSNLPPTANKPPEIPSSKGTLTSTRSLKRSIPSRPKSRFGEQPRFIDSNMFEENHLSLREQTGATSSRSSAPSTTKAQPEEEDDEEKTEPLNKKHKKVKKVKKVKVKTLIKLVGFVFIIGCLVASLTVKRLKNCFFWGLRVWKWCLLATVILCGMIFTHWVMHIVVSLIEGNFLLKKKVLYFVHGLKKSVQVTIWLALVLVTWVSLFDRRNHRNSNLGIIGKILDTITLTLIALLVGAFLWLVKTLLLKILASKFHKDQFFDRIQEFIFHHHVLQTLSRSPLMEGAGSRNKFNCCRFSLESKKSDHKKVIGMGGIHRLQREKVTAWTMKVLIEAVISSEMSISQTLDESYHNIADGEITDEMETASAVAHKILENVALGNMFIQEEDLKRFMVKEEVDLVLPHFEVDETRRIDEKALTKWVVKVYQERKTLVHALNDTKTAVKQLNNLVTAILIIVTAVIWLLLMEIATSKVLVFLLSQLAVAAFMFGSSCKTAFEALIFVFVMHPFDVGDRCAVDGVHLLVEEMNILTTVFLKLNNEMVYYPNSVLATKPITNYYRSPDMCDTIEFSISFATPLERIGVMKEKIKRYLEKNPQHWHPNHSVVVKEIENVNKVTIALYTNHTMNFQDWSEKSRRRSELVMELKRIFEELKINYDLLPQTVHLFPVQEQ 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21742514 21746271 - Lsi04G013940.1 Lsi04g01394 661443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01394 738 PIRSF Memb_At2g17000 4 738 IPR016688 -
Lsi04g01394 738 Pfam Mechanosensitive ion channel 517 722 IPR006685 GO:0016020|GO:0055085
Lsi04g01394 738 MobiDBLite consensus disorder prediction 49 63 - -
Lsi04g01394 738 MobiDBLite consensus disorder prediction 10 33 - -
Lsi04g01394 738 MobiDBLite consensus disorder prediction 129 146 - -
Lsi04g01394 738 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 25 732 - -
Lsi04g01394 738 MobiDBLite consensus disorder prediction 129 164 - -
Lsi04g01394 738 MobiDBLite consensus disorder prediction 1 115 - -
Lsi04g01394 738 SUPERFAMILY Sm-like ribonucleoproteins 565 625 IPR010920 -
Lsi04g01394 738 Gene3D - 576 625 IPR023408 -
Lsi04g01394 738 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 25 732 IPR016688 -
Lsi04g01394 738 MobiDBLite consensus disorder prediction 83 100 - -
Lsi04g01394 738 MobiDBLite consensus disorder prediction 147 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01394 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101216955 1017.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01394 Lsi-Chr4:21742514 Lsi06g00313 Lsi-Chr6:3564957 0 dispersed
Lsi04g01392 Lsi-Chr4:21731486 Lsi04g01394 Lsi-Chr4:21742514 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g144 Blo01g01450 Blo12g01027 . Bda03g00130 . . Bma04g00265 . . . Cma01g01705 . . . . . . . . . . . . . Cla05g01618 Cam05g1731 Cec05g1736 Cco05g1792 Clacu05g1720 Cmu05g1604 Cre05g1731 Cone4ag1693 . . . Lsi04g01394 . . . . . . . . Bpe04g00114 . . . Cmo01g01806 . . . Car01g01323 . . Cpe02g00286 Bhi09g03090 . . . . . . . . . . . . . . . . Cme07g00186
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01394 Lsi_Chr04 FPKM 15.955339 16.829542 18.626106 18.723789 32.772522 34.582577 32.466053 27.645628 26.09901 26.318384