Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01397 ATGAAAGCAGCCATCTCTTCGTTGTTAAGCTCCAGAAATTTCAATCTCCACCAATCCTCTCTCTCCCGCTCCATTTTCCGGCAGCCCTCCCTTCTTCTACCGTCTCAGTTTCCGGTCATATCCAACGAAGCCAAGGCCACCGGCGCCAATTTTATCAGCCTGCGGCATAAGTTCCGTTTCCACTCCATCAAGTCCTCGCCGATTATGGCTTCATCCTTCAATCCCGAGCAAGCTAGATCTCCACCTGCACTTCCGTTGCCGATCCCGCCGGTCACCAAGTTTAAAATCGCGCTATGTCAATTGGCGGTGACGGCCGATAAGCAAAGGAATATTGAACATGCTCGTAAGGCCATTGAGGAGGCTGTGGAAAAGGGCGCCCAGCTTGTTGTATTGCCCGAAATATGGAATTGTCCTTATTCACACGATTGCTTACCACTTTATGCCGAGGACATTGAAGCCGGTGGTGATGCCTCCCCTTCAACAGCCATGTTATCTGAAGTTGCTCGTCGTTTAAAAGTCACAATAGTCGGCGGCTCAATTGTAGAGCGCTCGGGGGATAAAATTTATAATTCTTCTTGTGTTTTTGGTACCGACGGAAAGCTGAAAGCTAAACACAGGAAGATACATCTTTTTGATATTGATATCCCTGGAAAGATCACTTTTATCGAGTCTAAGACCATCGCAGCAGGTCAAACTCCTACTGTTGTGGACACAGAAGTTGGACGTATTGGTATAGGAATCTGTTATGACATTCGTTTTCCAGAACTAGCAATGATATATGCTGCAAGAGAACCATGTTTTGGTGCTGACACTCGCAAATTCATAACATCAGGTGCTCACTTGATTTGCTATCCTGGGGCCTTTAACATGACTACTGGACCATTGCATTGGGAATTATTGCAGCGTGCAAGGGCTGTAGATAATCAGTTGTATGTGGCAACGTGTTCACCTGCTCGAGATGTCAGTGCTGGTTATGTAGCTTGGGGCCACTCAACCCTTGTTGGGCCGTTTGGGGAAGTGCTAGCTACAACAGAACATGATGAAGCAATAGTCATATCTGAGATTGATTATTCCCTTATCGAGCTTAGAAGGACTAACCTACCACTTCCGAAGCAAAAGCGTGGTGATCTTTACCAGTTGGTAGATCTTCAGAGGCTGAAATCCGAATGA 1170 46.5 MKAAISSLLSSRNFNLHQSSLSRSIFRQPSLLLPSQFPVISNEAKATGANFISLRHKFRFHSIKSSPIMASSFNPEQARSPPALPLPIPPVTKFKIALCQLAVTADKQRNIEHARKAIEEAVEKGAQLVVLPEIWNCPYSHDCLPLYAEDIEAGGDASPSTAMLSEVARRLKVTIVGGSIVERSGDKIYNSSCVFGTDGKLKAKHRKIHLFDIDIPGKITFIESKTIAAGQTPTVVDTEVGRIGIGICYDIRFPELAMIYAAREPCFGADTRKFITSGAHLICYPGAFNMTTGPLHWELLQRARAVDNQLYVATCSPARDVSAGYVAWGHSTLVGPFGEVLATTEHDEAIVISEIDYSLIELRRTNLPLPKQKRGDLYQLVDLQRLKSE 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21769234 21774378 - Lsi04G013970.1 Lsi04g01397 661446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01397 389 PANTHER NITRILASE-RELATED 58 388 - -
Lsi04g01397 389 PANTHER OMEGA-AMIDASE, CHLOROPLASTIC-LIKE 58 388 - -
Lsi04g01397 389 CDD nit 95 374 IPR045254 GO:0016811
Lsi04g01397 389 Coils Coil 104 124 - -
Lsi04g01397 389 Gene3D - 91 383 IPR036526 -
Lsi04g01397 389 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 94 357 IPR003010 GO:0006807
Lsi04g01397 389 Pfam Carbon-nitrogen hydrolase 95 361 IPR003010 GO:0006807
Lsi04g01397 389 SUPERFAMILY Carbon-nitrogen hydrolase 91 369 IPR036526 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01397 K13566 NIT2, yafV; omega-amidase [EC:3.5.1.3] - csv:101213917 671.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00701 Lsi-Chr3:9207462 Lsi04g01397 Lsi-Chr4:21769234 6.30E-10 dispersed
Lsi04g00831 Lsi-Chr4:8018544 Lsi04g01397 Lsi-Chr4:21769234 1.48E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g141 . . . . Bpe02g01554 . . . . . Cma01g01709 . Car09g00306 . . . Cpe06g00254 . . . . . . . Cla05g01615 Cam05g1728 Cec05g1731 Cco05g1789 Clacu05g1717 Cmu05g1601 Cre05g1725 Cone4ag1690 Cone7ag1609 . Cone20ag0282 Lsi04g01397 . . . Blo17g00275 Blo18g00264 Bda01g01342 Bda13g01588 Bpe14g00277 . . Bma02g00546 Sed06g0788 Cmo01g01803 Cmo09g00357 Cma09g00358 . Car01g01327 . . Cpe02g00284 Bhi09g03094 Tan01g3460 Cmetu01g2122 . Hepe01g1910 Mch11g0442 . . . . . . . . . . . Cme07g00191
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004723 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01397 Lsi_Chr04 FPKM 29.167383 34.048378 12.781734 14.272436 31.564316 26.338747 30.028919 30.851923 31.936979 30.941456