Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01399 ATGATTGTTTGTGTCAAAAAGGTGAAGCAAGAAGCTGCGGAGGATTGGGACGAGACGATGCCGTTACCTGGAGATGTAATTGAAGGGGTTGCAGAAGGCGATGACGATGAGCTGTTCATATCGGCCAAAGCCAAGGCTGATCTCAGTTCGCATCTGGGCAAGATCAGCCAACAGTTTGAGATTGTGTGGTTGAAGGTGAAGCGTGGAGATGCCACACTTAAGCTTCGAGCACGCATCATCCAAGAGAAGGCATCAATTTTGCACAGAAAATTCACCATCCGGGCGGCAACTGATGATCGACATGTCGCGATACTCGGGGATCTCACCTTGGACCAGTGCTGTGAACTGCAAGAAATGAGTAGAAGAATATCAAACCCGGATGGTGCAGAATTTAACAGAAGAGGTGTAAAGTATGAATGGAGCAAGAAACTTGACGTGCATCTTCCCGACCATCGTTCTTCGGTCATAAGCTCCATCCTGTTCATGCCGCTGAAAGGCGAGCACTCCATGGAGGCCACGACTAGCCGGTGTATGGCCTGGTTTTGTGCTGCAGTTTCTTCAGGAGCACCTCTGGTCTTTGTCAATATTCAATCAGAACAGATAGTTAATGTAACTCAGGAGAAAAATCGGAACACAGGAAAAGAATCATGGTGGAGCAAGCAGCAAACCAACACTTCAAACCTGCAGGTTGTGCATGGAATAAGGCTATGGTTTCTACCTGGAGTATCAGAAGTTGCACTTGAAATGATTCCTGCACCGGGGGAAGTTCGTTTCGGAATGGATATCCAAAGAACCGAAGAGAAAACTTGTATTACTGAAGAAATCCAAATATGCTTACAAGAAAAACTAAGAGACCTGATGCCTGCTGGCGTTTTGATGCAGGGTTTCATCTGTGTCAGTTCGGTGACAAAAGGTTCCGCGGCTGACCGTTGTGGGCTTGGCAGCCTCTTGGAAGAGGCAAAGGCAACCAACTATCTCCTGTTGATTTCCCGATTAGAAGGAAAGAGCGTAATCCCATCAAACGTAAGCTCTACTGGCCTAATTCACTGCTGTGACCAAGCCGAGATAAGAAGCACTCTTGTTTCTGCAATGGATAGAATGGATACTGTGAGACTCCATATCATGGCTTTGCCTGATAGTTCTGATGCTCAAGCAAATGAAACCTCTAATAATAAGCTTCAAACAACCCGAAAATTTCTCCCTTAA 1206 46.19 MIVCVKKVKQEAAEDWDETMPLPGDVIEGVAEGDDDELFISAKAKADLSSHLGKISQQFEIVWLKVKRGDATLKLRARIIQEKASILHRKFTIRAATDDRHVAILGDLTLDQCCELQEMSRRISNPDGAEFNRRGVKYEWSKKLDVHLPDHRSSVISSILFMPLKGEHSMEATTSRCMAWFCAAVSSGAPLVFVNIQSEQIVNVTQEKNRNTGKESWWSKQQTNTSNLQVVHGIRLWFLPGVSEVALEMIPAPGEVRFGMDIQRTEEKTCITEEIQICLQEKLRDLMPAGVLMQGFICVSSVTKGSAADRCGLGSLLEEAKATNYLLLISRLEGKSVIPSNVSSTGLIHCCDQAEIRSTLVSAMDRMDTVRLHIMALPDSSDAQANETSNNKLQTTRKFLP 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21780036 21781656 + Lsi04G013990.1 Lsi04g01399 661448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01399 401 PANTHER PDZ DOMAIN-CONTAINING PROTEIN-RELATED 2 388 - -
Lsi04g01399 401 PANTHER OS02G0717600 PROTEIN 2 388 - -
Lsi04g01399 401 MobiDBLite consensus disorder prediction 381 401 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01399 - - - csv:105435315 665.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01399 Lsi-Chr4:21780036 Lsi10g01041 Lsi-Chr10:14646634 3.29E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g140 . Blo12g01025 . Bda03g00132 . . Bma04g00117 . . . Cma01g01711 . . . . . . . . . . . . . Cla05g01858 Cam05g1986 Cec05g1998 Cco05g2055 Clacu05g1977 Cmu05g1858 Cre05g1983 . . . . Lsi04g01399 . . . . . . . . . . . Sed13g1892 Cmo01g01801 . . . Car01g01328 . . Cpe02g00282 Bhi09g03095 Tan01g4589 Cmetu07g2158 . Hepe01g1908 Mch11g0441 . . . . . . . . . . . Cme07g00194
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011761 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01399 Lsi_Chr04 FPKM 7.377778 5.54528 7.540162 6.615154 4.865217 2.204074 3.672945 7.557831 7.857759 7.850425