Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g01400 | ATGAGCCTGGATGCAGCTGAGGATGAATCAACCTCTGAAATTCATATTCCAGCAGAGATTGATTGGGATATGTTAGACAAATCCAAATTCTTTTTTCTGGGTGCTGCTTTATTTTCAGGTGTTTCAACTGCCCTTTATCCTATTGTTGTTTTGAAAACTCGACTTCAGGTTTCAGCTACCAAGGTGTCATGCTTTAAAATGTCATATTCTATCATGCGTCATGAAGGCTTAAGAGGGTTTTACAGAGGATTTGGAACCTCTTTAATGGGAACTATCCCAGCTCGAGCCTTTTACATGGCAGCTCTTGAAGTTACCAAGAGTGGCGTTGGAAGTGCAACGATTAAGCTAGGATTTTCAGACACCACAGCCATGGCTATAGCTAATGCAGCTGCAGGGTTGAGCTCAGCCATGGCTGCGCAGTTGGTTTGGACTCCAATAGATGTTGTAAGCCAAAGACTAATGGTTCAGGGTTGCAATATCAGTGCTAAAAACAGTGTTTCTAATCTTAATTCTTGCGTCTATAAAAATGGTATTGACGCTTTTAGAAAGATCATTTATGCCGATGGTTTGCGAGGATTATATAGGGGATTTGGGATTTCTATATTGACATATGCTCCATCAAATGCAGTTTGGTGGACTTCTTACTCTGTAGCTCACAGACTCATTTGGAGTGGTCTAGGCTACTGCACAAGTAAGAAGGATGAGAGTTGTATTAATGGTGGCTATGGCTTTAAAGCAGATTCTAAGGCAACAGTGGCAGTTCAGGGGTTGAGTGCAGCCTTGGCCAGTGGAGTTTCTGCTATCATAACAATGCCACTGGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAACGGCCAAAGACGCCCTCTAACGGCATTGCAGACCATAAGGAACTTGATGAAGGAAGGTGGGCTGAATGCTTGTTATAGAGGGCTTGGACCAAGGTGGGCTTCGATGGCCATGTCGGCGACCACCATGATCACAACCTATGAGTTTCTCAAAAGGCTGTCTACTAAGAACCAAGATTGTTTGAGCAGATGA | 1053 | 43.21 | MSLDAAEDESTSEIHIPAEIDWDMLDKSKFFFLGAALFSGVSTALYPIVVLKTRLQVSATKVSCFKMSYSIMRHEGLRGFYRGFGTSLMGTIPARAFYMAALEVTKSGVGSATIKLGFSDTTAMAIANAAAGLSSAMAAQLVWTPIDVVSQRLMVQGCNISAKNSVSNLNSCVYKNGIDAFRKIIYADGLRGLYRGFGISILTYAPSNAVWWTSYSVAHRLIWSGLGYCTSKKDESCINGGYGFKADSKATVAVQGLSAALASGVSAIITMPLDTIKTRLQVLDGEENGQRRPLTALQTIRNLMKEGGLNACYRGLGPRWASMAMSATTMITTYEFLKRLSTKNQDCLSR | 350 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 21784232 | 21785284 | - | Lsi04G014000.1 | Lsi04g01400 | 661449 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g01400 | 350 | Gene3D | Mitochondrial carrier domain | 29 | 348 | IPR023395 | - | |
| Lsi04g01400 | 350 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J | 1 | 347 | - | - | |
| Lsi04g01400 | 350 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 123 | 221 | IPR018108 | - | |
| Lsi04g01400 | 350 | Pfam | Mitochondrial carrier protein | 251 | 344 | IPR018108 | - | |
| Lsi04g01400 | 350 | Pfam | Mitochondrial carrier protein | 36 | 107 | IPR018108 | - | |
| Lsi04g01400 | 350 | Pfam | Mitochondrial carrier protein | 126 | 222 | IPR018108 | - | |
| Lsi04g01400 | 350 | SUPERFAMILY | Mitochondrial carrier | 23 | 337 | IPR023395 | - | |
| Lsi04g01400 | 350 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 26 | 108 | IPR018108 | - | |
| Lsi04g01400 | 350 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN | 1 | 347 | - | - | |
| Lsi04g01400 | 350 | PRINTS | Mitochondrial carrier protein signature | 81 | 99 | IPR002067 | GO:0055085 | |
| Lsi04g01400 | 350 | PRINTS | Mitochondrial carrier protein signature | 40 | 58 | IPR002067 | GO:0055085 | |
| Lsi04g01400 | 350 | PRINTS | Mitochondrial carrier protein signature | 132 | 154 | IPR002067 | GO:0055085 | |
| Lsi04g01400 | 350 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 250 | 340 | IPR018108 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g01400 | Lsi-Chr4:21784232 | Lsi10g01460 | Lsi-Chr10:18705393 | 2.81E-22 | dispersed | |
| Lsi03g00181 | Lsi-Chr3:2374026 | Lsi04g01400 | Lsi-Chr4:21784232 | 5.10E-78 | transposed | |
| Lsi05g01397 | Lsi-Chr5:21810658 | Lsi04g01400 | Lsi-Chr4:21784232 | 8.02E-69 | transposed | |
| Lsi02g02914 | Lsi-Chr2:35350355 | Lsi04g01400 | Lsi-Chr4:21784232 | 4.20E-173 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g01400 | K15121 | - | csv:101213436 | 641.728 |