Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01403 ATGGGGCGCGTTAACAACAGAACCAAGGCATCGGCGCCGGGGACCGCCGGTAAATCAGAAAATCGGCGGATGAGCAACGCCGACCGTTCGGCATACTTCGCGAGGAGAGAGGCGGCGAAGATATTGCGGCGTGTCCTTGAGGGAGATGCTCAACGTCGAGCCGTCGCCTCCATCAAGTCACTCGTTTATGCTCCGTCTGTTCGGAATAAGAAGGGCACATTCGCTCTTGTTTGCAAGACTCTCAAATACCTCCCTGTAATCAAGGATGTACTTGAGGCTGCTGATTTATTGAGCAACAAATGGAAGGTACTCTTGCGTCTTCTTTATAGCTGCTCTCGGATCTGGTCTGATGACAGTTATTCTTTTACCATGATCGTTTGTAATGCATTTATTTTTCAAGTGTTGGCTAATTCTGTCTGGAGGCAGAAGGAATTAATTTATGTCATCATGTATGATATCCTCCTAGGCCAGCTGAAGACAACATCAGTCTATCATTATAAAAGTTTTGTCTGCCTACTGGGTCCAGTAGGGGTTTGGAGGCCAGAGCATGTGTTCAAATACAAGCGAACAATTAAAACTCATTTAGCTGGCGATGCAGAGAAGTTTCTCATGCGGCAGCAAAGTGCTTTACAATCTGTGGTTACACAGCTTTTGTCAAAGAATAAAGCAAACAATATTGAAGATTTAATAGCTCCTGGTGATGATCCCGAGATAATCATCAATTCAGGTGTATCAAGGCCTCGTTTTATCCGTGTGAATACTTTGAAGATGGATATCCACACAGCTATAAAAGAATTAGGCAAAAGATATGCAGTTCAGAAGGATGACATGGTTCCTGACCTCTTGGTACTTCCTCCAGGCAGTGATCTACATGATCATCCTCTGGTTGCAGATGGAAGTATCTTCATGCAAGGGAAGGCTAGTTCTATGGTTGCAGTAGCCCTTGATCCCAAGCCAGGATGGGAAGTCCTTGATGCATGTTCAGCTCCGGGTAACAAAACTGTCCACCTTGCCTCTCTCATGAATGGAAAAGGAAGGGTCATTGCATGTGAATTAAATGAAAACAGGGTCCGTGCCATTCTTTTGGATCCTTCCTGCTCTGGATCTGGAACTGCAGCTGCCAGATTAGATCATTTGCTCCCTTCACATGTTGAAGTTATTGATTGCTACCTCCATCATATCGTCGTGAATTGTGCAGGGAAAACCTCTGAGGATGACCTTGAACGACTGAACAAACTCGCTGCCTTTCAGAAAAAGGCTTTAGCACATGCATTTTCCTTTCCAGCCGTAGAGAGGATTGTTTACAGCACTTGTTCCATTCATCAAGTTGAAAACGAAGATGTTGTCCAGACATTATTACCTCTTGCTGAATCACATGGTTTTCAACTGGATACTCCATTTCCACAGTGGCAGAGACGAGGTCTCCCAGTTTTTGCGGGCGCTAACCATTTACTTCGAACCGATCCTGTTGAAGACAAAGAAGGGTTCTTCATAGCTCTATTTAAGAAGAAGCAGAACACAACACACCCATCTCCCCGAATTTCAGATAGAGATAAAAGCTCTAGAAATCGTGGTGGAAATGTCAGAAACAGTCGGGCAATAGCATGCCCTCCAACCAAGATGTTCAAACTGTGGTTGTATGCACTTTCGACAAGGACACGATGGAGAAAGAACCACACTCCATCCAAAACTAAAACAAGAACTTGA 1707 44.64 MGRVNNRTKASAPGTAGKSENRRMSNADRSAYFARREAAKILRRVLEGDAQRRAVASIKSLVYAPSVRNKKGTFALVCKTLKYLPVIKDVLEAADLLSNKWKVLLRLLYSCSRIWSDDSYSFTMIVCNAFIFQVLANSVWRQKELIYVIMYDILLGQLKTTSVYHYKSFVCLLGPVGVWRPEHVFKYKRTIKTHLAGDAEKFLMRQQSALQSVVTQLLSKNKANNIEDLIAPGDDPEIIINSGVSRPRFIRVNTLKMDIHTAIKELGKRYAVQKDDMVPDLLVLPPGSDLHDHPLVADGSIFMQGKASSMVAVALDPKPGWEVLDACSAPGNKTVHLASLMNGKGRVIACELNENRVRAILLDPSCSGSGTAAARLDHLLPSHVEVIDCYLHHIVVNCAGKTSEDDLERLNKLAAFQKKALAHAFSFPAVERIVYSTCSIHQVENEDVVQTLLPLAESHGFQLDTPFPQWQRRGLPVFAGANHLLRTDPVEDKEGFFIALFKKKQNTTHPSPRISDRDKSSRNRGGNVRNSRAIACPPTKMFKLWLYALSTRTRWRKNHTPSKTKTRT 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21789112 21794961 - Lsi04G014040.1 Lsi04g01403 661452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01403 568 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 261 504 IPR029063 -
Lsi04g01403 568 MobiDBLite consensus disorder prediction 1 25 - -
Lsi04g01403 568 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 194 358 IPR023267 GO:0001510
Lsi04g01403 568 PANTHER BNAA09G04380D PROTEIN 356 530 - -
Lsi04g01403 568 PANTHER BNAA09G04380D PROTEIN 8 108 - -
Lsi04g01403 568 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 238 504 IPR001678 GO:0008168
Lsi04g01403 568 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 8 108 IPR023267 GO:0001510
Lsi04g01403 568 MobiDBLite consensus disorder prediction 509 525 - -
Lsi04g01403 568 Gene3D Vaccinia Virus protein VP39 358 510 IPR029063 -
Lsi04g01403 568 MobiDBLite consensus disorder prediction 507 532 - -
Lsi04g01403 568 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 356 530 IPR023267 GO:0001510
Lsi04g01403 568 PRINTS RNA (C5-cytosine) methyltransferase signature 486 503 IPR023267 GO:0001510
Lsi04g01403 568 PRINTS RNA (C5-cytosine) methyltransferase signature 430 446 IPR023267 GO:0001510
Lsi04g01403 568 PRINTS RNA (C5-cytosine) methyltransferase signature 295 309 IPR023267 GO:0001510
Lsi04g01403 568 PRINTS RNA (C5-cytosine) methyltransferase signature 324 334 IPR023267 GO:0001510
Lsi04g01403 568 Gene3D Vaccinia Virus protein VP39 220 357 IPR029063 -
Lsi04g01403 568 MobiDBLite consensus disorder prediction 1 21 - -
Lsi04g01403 568 Pfam 16S rRNA methyltransferase RsmB/F 313 360 IPR001678 GO:0008168
Lsi04g01403 568 PANTHER BNAA09G04380D PROTEIN 194 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01403 K15264 NSUN5, WBSCR20, RCM1; 25S rRNA (cytosine2278-C5)-methyltransferase [EC:2.1.1.311] - csv:101212715 776.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01403 Lsi-Chr4:21789112 Lsi04g01887 Lsi-Chr4:25995521 8.18E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g124 Blo01g01455 . . . . . . Bma01g02203 . . . . Car09g00303 . . . Cpe06g00251 . . . . . . . Cla05g01855 Cam05g1978 Cec05g1991 Cco05g2049 Clacu05g1970 Cmu05g1852 Cre05g1977 . Cone7ag1601 . . Lsi04g01403 . . . . . . . . . . . . . Cmo09g00354 Cma09g00354 . . . . Cpe02g00278 Bhi09g03108 . . . Hepe01g1904 Mch11g0437 . . . . . . . . . . . Cme07g00198
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008710 0 4 1 1 0 1 1 1 1 1 1 1 2 1 0 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01403 Lsi_Chr04 FPKM 0.233555 0.271178 0.095431 0.0 0.0 0.617227 0.384235 0.277611 0.289413 0.242504