Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01406 ATGGCGGAGCAGCTTATTCAGATGCCCTACGACGTTACTGTTCGTCTTGCATTGGCTTCTCTTGAACGGAATTTGTTGCCGGACGCCGTCGTAAGAAGGTTCACCCGCTTGTTACTCGCCTCTCGTCTTCGCTCCGGTTACAAGCCTTCCTCTCAACTTCAACTCTCCGAATTGCTCCAATTTGTGCACTCTTTAAAGGAAATGCCCATAGCAATTAAGACTGATAAACCAAAAGCTCAACACTACGAAGTACCGACCTCCTTCTTCAAGTTGGTTTTGGGAAAGAATCTCAAGTACAGTTGTTGCTATTTCAATGACAAGTCAAGTACTTTGGAGGACGCTGAGGATGCAATGCTACAAATGTATTGTGAAAGGTCACAGCTTAAGAATGGTCACACTGTTCTTGATGTTGGATGTGGCTGGGGGTCGCTCTCATTGTACATTGGTCAAAAGTATAAGAATTGCACAGTAACTGGAATTTGCAATTCAACCACGCAGAAAGCTTACATCGAAGAGCAGGATCTCCAGCTGCATAATGTCAACATCATAGTTGCAGACATCAGCACATTTGAAATGGAAGCTGAATATGACAGAATATTTTCCATTGAAATGTTTGAGCATATGAAGAACTACAAGGATCTTCTCAAGAAAATATCAGGTTGGATGAAACAGGATAGTCTCCTATTTGTTCATCATTTTTGCCATAAGGTTTTTGCCTATCACTTTGAGGTATCATATTTCTACACGGCTAGGGCCCTTAATTACTGGCTTGATTCAATGCTGCTCACGTTTTATGTAGTAGTCATCTTGATAAACAGGAAATATTATGCTAACCATGATGTAAATGAAGATGATTGGATTACTAGATACTTCTTCGAAGGTGGTACAATGCTTTCCGCAAATCTACTTCTCTATTTTCAGTTCCTGTTAGATAAGGATGACGTGTCAATCGTAGACCATTGGCTTGTGAATGGCAAGCACTATTCTCAAACAAGTGAAGAGTGGCTCAAAAGAATGGACGAGAATGCAGCTTTAATAAAACCAATCATGGCAACTACTTATGGCAAGGACTCGGCTGTAAAATGGACTTGGCTGAGTTATTTGGATACAACAATGGGGAAGAATGGATGGTTAGCCATTTCTTATTCAAGAAGAAATGATGCAAGCAGCAAAGCT 1176 40.9 MAEQLIQMPYDVTVRLALASLERNLLPDAVVRRFTRLLLASRLRSGYKPSSQLQLSELLQFVHSLKEMPIAIKTDKPKAQHYEVPTSFFKLVLGKNLKYSCCYFNDKSSTLEDAEDAMLQMYCERSQLKNGHTVLDVGCGWGSLSLYIGQKYKNCTVTGICNSTTQKAYIEEQDLQLHNVNIIVADISTFEMEAEYDRIFSIEMFEHMKNYKDLLKKISGWMKQDSLLFVHHFCHKVFAYHFEVSYFYTARALNYWLDSMLLTFYVVVILINRKYYANHDVNEDDWITRYFFEGGTMLSANLLLYFQFLLDKDDVSIVDHWLVNGKHYSQTSEEWLKRMDENAALIKPIMATTYGKDSAVKWTWLSYLDTTMGKNGWLAISYSRRNDASSKA 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21808038 21811720 + Lsi04G014060.1 Lsi04g01406 661455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01406 392 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 5 363 - -
Lsi04g01406 392 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 80 351 IPR029063 -
Lsi04g01406 392 CDD AdoMet_MTases 133 233 - -
Lsi04g01406 392 Pfam Mycolic acid cyclopropane synthetase 78 368 - -
Lsi04g01406 392 PANTHER - 5 363 - -
Lsi04g01406 392 Gene3D Vaccinia Virus protein VP39 72 373 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01406 - - - csv:101212472 591.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01406 Lsi-Chr4:21808038 Lsi09g01214 Lsi-Chr9:19470405 8.41E-16 dispersed
Lsi04g01405 Lsi-Chr4:21800132 Lsi04g01406 Lsi-Chr4:21808038 3.54E-119 tandem
Lsi04g01406 Lsi-Chr4:21808038 Lsi04g01407 Lsi-Chr4:21818851 4.64E-26 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g121 . . Bda01g00631 . . Bpe02g00499 . Bma01g02205 . . Cma01g01716 . . . . . . . . . . . . . Cla05g01853 . Cec05g1989 Cco05g2047 . Cmu05g1850 Cre05g1975 Cone4ag1682 Cone7ag1599 . . Lsi04g01406 . . . . . . . . . . . . Cmo01g01795 . . . Car01g01332 . . Cpe02g00277 Bhi09g03119 . . . . . . . . . . . . . . . . Cme07g00202
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003108 1 12 0 1 1 1 1 1 2 1 2 1 1 2 1 1 2 3 1 2 1 2 1 1 1 2 1 1 3 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01406 Lsi_Chr04 FPKM 10.522935 15.747854 14.628551 13.094411 19.753416 11.778516 17.850584 13.694067 10.839252 13.356235