Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01408 ATGGATCAATTCAGAGGTCAACCTCGGCTCCCGAAATTTGCCGTTCCGAAACGATACGATATCAGCCTTAAACCGGACCTTTGCCTTTGTAAATTCTCTGGTTCTGTTGCAATCGATATCGATATCCTTTCGGATACTCGATTTCTAGTACTCAACGCCGCCGACCTTCATGTCAATGATGCTTCTGTCTCCTTCACCAATCGGAACTCCGCCAAGGTTATCCAGCCTTCAAGCATTCAAGCATGTGAAGAGAACCAAATTCTAGTTTTGGAGTTTGCAGAGACGCTACCAATTGGGTTAGGAACATTGAGTATGGACTTCGAAGGAATCTTGAATGATAAAATGAAAGGATTCTATAGAAGCACTTATGAGCACAACGGTGAGAAGAAAAACATGGCTGTTACACAATTTGAACCAGTTGATGCTAGACGTTGCTTCCCTTGCTGGGATGAACCTGCTTTTAAGGCTACGTTCAAGATCACGTTAGATGTACCATCTGACCTAATAGCACTTTCCAACATGCCAATTATTGAAGAAAAAGTGAATGGCCATTTGAAGACGGTTTCATATCAAGAATCACCAATTATGTCCACATATTTAGTGGCCATTGTTGTTGGTTTATTTGATTATGTGGAAGATCATACAACTGATGGGGTCAAAGTTCGTGTATACTGTCAAGTTGGAAAGGCAAATCAAGGAAAATTTGCATTACATGTTGCTGTCAAGACTCTTGACCTATACAAGGACTATTTTGCTGTGCCATACTCTCTGCCAAAACTCGACATGATTGCAATTCCTGACTTTGCTGCTGGGGCCATGGAAAACTATGGTTTAGTTACCTATCGTGAGACTGCTTTACTTTATGATGATCAGCACTCTGCAGCTGCTAACAAACAGAGGGTGGCAACTGTTGTGGCTCATGAACTTGCACACCAATGGTTTGGCAACCTTGTAACTATGGAGTGGTGGACACATTTGTGGCTGAATGAGGGATTTGCAACATGGGTGAGTTATTTAGCTACTGATAGCTTGTTTCCAGAGTGGAAAGTATGGAATCAATTTCTTGAAGAATCAAACCATGGTCTTACTTTGGATGGGCTTGCTGAATCACATCCAATTGAGGTTGAGATAAATCATGCCAGTGAGGTTGATGAAATATTTGATGCAATTAGCTACAGAAAAGGTGCATCTGTTATTCGAATGTTACAAAGCTATCTCGGTGCTGAGTGTTTTCAGAAATCACTTGCCTCATACATAAAAAAGCACAGTTGTTCCAATACAAAGACTGAAGACTTATGGGCTGCTCTAGAGGAGGGGTCTGGTGAACCTGTGAACAACTTAATGAGTTCCTGGACCAAGCAACAAGGATATCCTGTTGTCACTGTCAAAGTGAAAGATGAGAAATTGGTGTTTGAGCAGTCGAGATTTTTGTTGAGTGGTTCCTGTGGAGAGGGGCAATGGATTGTTCCCATAACATTGTGCTGTGGCTCTTATGATGTGCGCAAAAACTTTTTGCTGCAAACAAAGACCGAATCTGTAGACATCAAGGAGTTCCTTGGTTGCTCCATCAGCAAATGCTCTGGTGGAAATGATAAATGTTGTGATTGGATAAAGCTTAATGTTGATCAGACTGGTTTTTACCGGGTGAAGTATGACGAAGATCTTGCAGCTAAGCTTAGGAATGCAATAGAGAAAAATCATTTGACTGCAACGGACAGATTTGGTATTTTGGATGATGCATTTGCCCTTTCTATGGCTTGCCAGCAATCAGTTACCTCTTTGCTTACCTTGATGGGTGCTTATAGAGAGGAACTTGACTATACTGTGTTATCAAATTTGATCAGTATAAGCTACAAACTTGAGAGAATTGCAGCTGATGCAGTTCCTGAGTTACTGGACAACCTCAGGCAATTTTTCACCAACGTTTTCCAATATGCAGCAGAAAAACTTGGTTGGGATCCCAAACCAGACGAAAGCCATCTCGATGCAATGTTGAGAGGAGAAATTTTGACTGCTCTTGCTCTGTTCGGTCATGAGCAGACAATAAAAGAAGCAAACAGGCGATGTCTTGCATTCTTAGATGACAGAAGTACGCCACTACTCCCACCTGATATTAGAAAGGCGGCATATGTGGCTGTAATGCAGACAGCCAATGCTTCAAACAGATCTGGTTACGAATCACTTTTAAGAATTTATAGAGAGACTGATCTTAGCCAGGAGAAAACACGCATTTTAAGTTCCTTGGCATCTTGTCCAGATCCTAATATCATTCTTGAAGTTCTCAACTTTTTATTGTCGTCTGAGGTTCGTAGTCAAGATGCTGTTTTTGGACTAGGTGTTAATTGGCAGGCACGTGAAACAGCTTGGACATGGCTGAAGACTAAGTGGGAAGAAATCTCAAAAATCTTCGATTCTGGGTTTCTGATTGGACGCTTTGTCAGTGCCACAGTCTCACCGTTTGCCTCGTATGAAAAAGCTAAGGAAGTTGAGGAGTTCTTTGCAAGCCGTGTTAAGCCATCAATGGCCCGAACGTTGAAGCAGAGCATTGAGCGTGTTCACATCAATTCGAGATGGGTTCAGAGCGTCCAGAAGGAGCATGCTCTTCCCGAAGCTATTAGAGAGCTAGCATGGAGGCGATATTAG 2643 42.15 MDQFRGQPRLPKFAVPKRYDISLKPDLCLCKFSGSVAIDIDILSDTRFLVLNAADLHVNDASVSFTNRNSAKVIQPSSIQACEENQILVLEFAETLPIGLGTLSMDFEGILNDKMKGFYRSTYEHNGEKKNMAVTQFEPVDARRCFPCWDEPAFKATFKITLDVPSDLIALSNMPIIEEKVNGHLKTVSYQESPIMSTYLVAIVVGLFDYVEDHTTDGVKVRVYCQVGKANQGKFALHVAVKTLDLYKDYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLATDSLFPEWKVWNQFLEESNHGLTLDGLAESHPIEVEINHASEVDEIFDAISYRKGASVIRMLQSYLGAECFQKSLASYIKKHSCSNTKTEDLWAALEEGSGEPVNNLMSSWTKQQGYPVVTVKVKDEKLVFEQSRFLLSGSCGEGQWIVPITLCCGSYDVRKNFLLQTKTESVDIKEFLGCSISKCSGGNDKCCDWIKLNVDQTGFYRVKYDEDLAAKLRNAIEKNHLTATDRFGILDDAFALSMACQQSVTSLLTLMGAYREELDYTVLSNLISISYKLERIAADAVPELLDNLRQFFTNVFQYAAEKLGWDPKPDESHLDAMLRGEILTALALFGHEQTIKEANRRCLAFLDDRSTPLLPPDIRKAAYVAVMQTANASNRSGYESLLRIYRETDLSQEKTRILSSLASCPDPNIILEVLNFLLSSEVRSQDAVFGLGVNWQARETAWTWLKTKWEEISKIFDSGFLIGRFVSATVSPFASYEKAKEVEEFFASRVKPSMARTLKQSIERVHINSRWVQSVQKEHALPEAIRELAWRRY 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21837951 21846389 + Lsi04G014080.1 Lsi04g01408 661457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01408 880 Pfam Peptidase family M1 domain 235 451 IPR014782 GO:0008237|GO:0008270
Lsi04g01408 880 Pfam Peptidase M1 N-terminal domain 15 200 IPR045357 -
Lsi04g01408 880 Gene3D - 457 551 - -
Lsi04g01408 880 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 9 206 IPR042097 -
Lsi04g01408 880 Gene3D - 553 867 - -
Lsi04g01408 880 PANTHER PROTEASE M1 ZINC METALLOPROTEASE 3 876 - -
Lsi04g01408 880 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 215 462 - -
Lsi04g01408 880 Pfam ERAP1-like C-terminal domain 536 853 IPR024571 -
Lsi04g01408 880 Gene3D Neutral Protease Domain 2 209 456 IPR027268 -
Lsi04g01408 880 PANTHER AMINOPEPTIDASE 3 876 - -
Lsi04g01408 880 CDD M1_APN-Q_like 18 453 IPR034016 -
Lsi04g01408 880 Gene3D tricorn interacting facor f3 domain 4 208 IPR042097 -
Lsi04g01408 880 PRINTS Membrane alanyl dipeptidase (M1) family signature 304 319 IPR001930 GO:0006508
Lsi04g01408 880 PRINTS Membrane alanyl dipeptidase (M1) family signature 190 205 IPR001930 GO:0006508
Lsi04g01408 880 PRINTS Membrane alanyl dipeptidase (M1) family signature 268 278 IPR001930 GO:0006508
Lsi04g01408 880 PRINTS Membrane alanyl dipeptidase (M1) family signature 143 158 IPR001930 GO:0006508
Lsi04g01408 880 PRINTS Membrane alanyl dipeptidase (M1) family signature 323 335 IPR001930 GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01408 K08776 NPEPPS; puromycin-sensitive aminopeptidase [EC:3.4.11.14] - csv:101215753 1634.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00164 Lsi-Chr2:1357907 Lsi04g01408 Lsi-Chr4:21837951 7.37E-06 dispersed
Lsi04g01408 Lsi-Chr4:21837951 Lsi07g00585 Lsi-Chr7:6225265 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g119 Blo01g01456 . Bda01g00630 . . Bpe02g00498 . . . . Cma01g01717 . . . . . . . . . . . . . Cla05g01851 Cam05g1975 Cec05g1988 . Clacu05g1968 Cmu05g1849 Cre05g1973 Cone4ag1679 Cone7ag1273 . . Lsi04g01408 . . . . . . . . . . . . Cmo01g01794 . . . Car01g01333 . . Cpe02g00276 Bhi09g03122 . . . Hepe01g1902 Mch11g0434 . . . . . . . . . . . Cme07g00203
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001781 2 8 2 2 1 2 2 2 3 3 2 2 2 3 2 2 2 2 2 2 3 2 2 2 2 2 3 1 2 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01408 Lsi_Chr04 FPKM 6.002778 5.340483 7.407643 8.374611 11.344604 10.710693 10.15612 9.493419 8.229146 9.698734