Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01409 ATGGAGGATCGGGAGGAGGAAGATAAGGCAGAAGAAGAGGTGCAAGGTTCCAGCCTGACGATGGAGAAAGTAGCGGCGGCTAAGAAGTTTATAGAGAACCATTACAGAGCTCAGATGAAGAACATTCAAGAACGGAAGGAGAGACGATGGATGTTGGAAAGAAAGTTAGCCTCATCGGATGTGCCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTTAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATCATTGGCAGGGGGGCTTTTGGTGAGGTTCGATTATGTCGTGAGAAGAAATCTGGTGATATATATGCAATGAAAAAGTTGAAAAAATCTGAAATGCTGATGAGAGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCACTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCTGAATACTTGTATTTGATCATGGAATATCTGCCAGGTGGAGATATGATGACTCTGCTTATGAGAGAAGACACGTTGACTGAAAATGTAGCTAAATTTTACATTGCACAAAGTGTTCTAGCAATAGAATCTATCCACAGGCACAGCTATATTCACAGGGATATTAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAACTTTCTGATTTTGGTCTCTGTAAGCCACTGGATTCTTTAACCCTATCAGCACTACATGAAAATAAAGCCATGGATGATGAAAATTTGGCAGAACCAATGGATATTGATGATAATAGGAGCAGTTGGAAGAGTCCCAGTGAACAGCTACACCATTGGCAAATGAACCGGAGGAAATTGGCATTTTCAACTGTTGGAACACCAGATTATATAGCTCCAGAAGTATTGCTTAAAAAAGGATATGGGATGGAGTGTGACTGGTGGTCCCTCGGTGCAATTATGTATGAGATGCTCGTAGGTTACCCTCCATTTTACTCCGATGATCCAATCACTACCTGTAGAAAGATTGTTCATTGGAAAAATCACTTGAAGTTTCCAGAAGATGCTAAGTTGACAATTGAAGCAAAGGATCTCATTTGTAGGTTGCTGTGCGATGTTGAGCATAGACTTGGTACTGGAGGAGCATACCAAATTAAAGCCCATCCTTGGTTCAAAGATGTCGTCTGGGATAGGCTTTATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAACGGAGAGCTCGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGGAAACGTGGCTCAGGTCCGTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACATACAAGAACTTCGATGCTGTCAAAGGAGCGCTTCATGGATCACTTGATGGCACTGGAGGAGACTACACAGCCGAACTAATAGGCAATGAGGCCGAAATGCAGATGGTAGCAGTATCAGGAGACCCCATGTTGCCATAA 1509 41.88 MEDREEEDKAEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHSYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENKAMDDENLAEPMDIDDNRSSWKSPSEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNHLKFPEDAKLTIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGALHGSLDGTGGDYTAELIGNEAEMQMVAVSGDPMLP 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21848408 21855314 - Lsi04G014090.1 Lsi04g01409 661458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01409 502 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 13 469 - -
Lsi04g01409 502 ProSiteProfiles AGC-kinase C-terminal domain profile. 395 468 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lsi04g01409 502 Gene3D Phosphorylase Kinase; domain 1 56 176 - -
Lsi04g01409 502 SUPERFAMILY Protein kinase-like (PK-like) 77 432 IPR011009 -
Lsi04g01409 502 CDD STKc_NDR_like 91 459 - -
Lsi04g01409 502 SMART serkin_6 93 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01409 502 MobiDBLite consensus disorder prediction 1 20 - -
Lsi04g01409 502 Pfam Protein kinase domain 94 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01409 502 Pfam Protein kinase domain 285 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01409 502 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Lsi04g01409 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Lsi04g01409 502 Pfam Protein kinase C terminal domain 413 458 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lsi04g01409 502 SMART pkinase_C_6 395 460 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lsi04g01409 502 ProSiteProfiles Protein kinase domain profile. 93 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01409 502 Gene3D Transferase(Phosphotransferase) domain 1 293 414 - -
Lsi04g01409 502 Gene3D Transferase(Phosphotransferase) domain 1 177 243 - -
Lsi04g01409 502 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 469 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01409 Lsi-Chr4:21848408 Lsi09g01229 Lsi-Chr9:19708524 0 dispersed
Lsi01g00049 Lsi-Chr1:586970 Lsi04g01409 Lsi-Chr4:21848408 0 transposed
Lsi02g00006 Lsi-Chr2:71414 Lsi04g01409 Lsi-Chr4:21848408 5.42E-06 transposed
Lsi08g01474 Lsi-Chr8:22869166 Lsi04g01409 Lsi-Chr4:21848408 0 transposed
Lsi04g01409 Lsi-Chr4:21848408 Lsi06g00299 Lsi-Chr6:3436514 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83587 PF00069 Pkinase 7.30E-43 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01409 K08790 - csv:101212228 994.956