Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01410 ATGGATTTTGGGCGTGGGAGAACTGGAGAAGAGACGAGGCCGGGGGAGGGTTGCGGTTGCAGCCGAAGCGGAGCAGACGGCCAAGCCATGGGAGACGATGCTTATACCAGATACACCGCCTCAGTAGATAGAGCAGGAAGTGTAGCGAGATCTGGCATTTCAACCTACTCTGAAGCAGCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGATCAGTGGCACATCCCTTCTGATTATTTGCAGAAAGATACAAATTCATTAGGACCTGGAGCTTATGGATATACTGACGTAGGAGGCATTGGTAATCATCCAGAACCAGTTATTGGCGGTGTGGCATCTGGAGTGAGTGCAAAAGGCTACACATCTCCTTTCGAAGATTCATTAGCAAGTCAAAGAAAAGACATTGCAGTGGGCAGTAGTCCAGGAGTGATGGGTATGGCTGACATAGGTCATGAAAGGGCCAATTCTCTCAGTCTCAGAACTGCTGAATGTGATCCAAATTCATCTCGGGAATCAAACATTCTTTTCGTTGATGGACTTCCGACAGATTGTACTAGGAGAGAAGTAGGCCGTATCCTTGCACCTTATAGTGGAGATAAAGCTATGGTATTATGCTTTGTTGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTTACAAGTTCGATGACAAAAAGTCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGTTTACCATCTAACCATGATGACAGGCGATGA 774 45.99 MDFGRGRTGEETRPGEGCGCSRSGADGQAMGDDAYTRYTASVDRAGSVARSGISTYSEAAPLTSYPNSTSIDQWHIPSDYLQKDTNSLGPGAYGYTDVGGIGNHPEPVIGGVASGVSAKGYTSPFEDSLASQRKDIAVGSSPGVMGMADIGHERANSLSLRTAECDPNSSRESNILFVDGLPTDCTRREVGRILAPYSGDKAMVLCFVEFIEARYARAAMEALQGYKFDDKKSDSPALKIQFAHFPFRLPSNHDDRR 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21866962 21869669 + Lsi04G014100.1 Lsi04g01410 661459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01410 257 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 40 250 - -
Lsi04g01410 257 SUPERFAMILY RNA-binding domain, RBD 153 232 IPR035979 GO:0003676
Lsi04g01410 257 MobiDBLite consensus disorder prediction 1 31 - -
Lsi04g01410 257 Gene3D - 170 247 IPR012677 -
Lsi04g01410 257 PANTHER PROTEIN COUCH POTATO 40 250 - -
Lsi04g01410 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 245 IPR000504 GO:0003723
Lsi04g01410 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 232 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01410 - - - csv:101211987 375.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01410 Lsi-Chr4:21866962 Lsi05g00120 Lsi-Chr5:1892156 2.87E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g115 Blo01g01458 Blo12g01020 Bda01g00629 Bda03g00137 . Bpe02g00497 Bma04g00121 Bma01g02207 . . Cma01g01720 . Car09g00301 . . . Cpe06g00249 . . . . . . . Cla05g01849 Cam05g1973 Cec05g1986 Cco05g2045 Clacu05g1966 Cmu05g1847 Cre05g1971 Cone4ag1677 Cone7ag1275 . . Lsi04g01410 . . . . . . . . Bpe04g00119 . . . . Cmo09g00353 Cma09g00353 . Car01g01335 . . . Bhi09g03127 . . . . . . . . . . . . . . . . Cme07g00205
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004655 2 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01410 Lsi_Chr04 FPKM 6.136184 9.156752 33.521656 33.279694 60.466679 52.990997 68.578682 0.94723 0.517112 0.75309